Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq43 309 5e-82 seq17 78.8 2e-12 >seq43 Length=27552 Score = 309 bits (342), Expect = 5e-82 Identities = 228/262 (87%), Gaps = 4/262 (2%) Strand=Plus/Minus Query 35 CAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCC-TATTA 93 ||| |||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||| Sbjct 16031 CAGAAGGGTAAA-CTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCCTATTA 15973 Query 94 GTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACAT 153 |||||||||||||||||| ||| |||| ||||||| |||||||||||||||||||| Sbjct 15972 GTGGGTGAACAATCCAACACTTGGTGAATGCTGCTTCACAATGATAGGAAGAGCCGACAT 15913 Query 154 CGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTG 213 ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 15912 CGAAGGATCCAAAAGCAACGTCGCTAGGAACGCTTGGCTGCCACAAGCCAGTTATCCCTG 15853 Query 214 TGGTAACTTTTCTGGCACCTCTAGCC--TCAAATTTCGAGGGACTAAAGGATCGATAGGC 271 |||||||||||||| |||||||| | |||| | | |||||||||||||||| Sbjct 15852 TGGTAACTTTTCTGACACCTCTACACGGATAAATACCCCAAGTATAAAGGATCGATAGGC 15793 Query 272 CACACTTTCATGGTTTGTATTC 293 || |||||| |||| ||||| Sbjct 15792 CATGCTTTCACAGTTTCTATTC 15771 >seq17 Length=139726 Score = 78.8 bits (86), Expect = 2e-12 Identities = 123/175 (70%), Gaps = 7/175 (4%) Strand=Plus/Plus Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112 |||||||| |||| ||| |||||||||||||| || ||| |||| ||||| ||||| Sbjct 21582 CTGTCTCACGACGTTCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACC 21641 Query 113 CTT----ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAG 168 ||| || | | | ||| | | ||| || ||||||||||||| | |||| Sbjct 21642 CTTTGGAACGTACTACCGCTCC---AGGATGCGATGAGCCGACATCGAGGTGCCAAACCT 21698 Query 169 CAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTT 223 | ||||| | || || ||||| | | |||| ||||||||| |||||||| Sbjct 21699 CCCCGTCGATGTGGACTCTTGGGGGAGATCAGCCTGTTATCCCTAGAGTAACTTT 21753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854399000352