Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq17 192 1e-46 seq43 84.2 5e-14 >seq17 Length=139726 Score = 192 bits (212), Expect = 1e-46 Identities = 307/421 (73%), Gaps = 21/421 (5%) Strand=Plus/Plus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| ||||| | ||||||||| ||||||||||| |||||| ||||| ||| Sbjct 23380 CCACAACTCAT-CCGCTGA-TTTTTCAACATCAGTCGGTTCGGACCTCCACTTAGT-GTT 23436 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAG-ATCGCCCGGTTTTCGGGTCTATTTCCCAG 127 ||| || ||| || |||| ||| || ||| ||| ||||| || ||||||| | | | Sbjct 23437 ACCTAAGCTT-CATCCTGGTCAT-GGCTAGGATCACCCGGGTT-CGGGTCTGTAAACAAT 23493 Query 128 CGACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAAGCTT- 186 ||| ||| || | || |||||||| || | || | ||||| | | ||| Sbjct 23494 GACCTAT--GCCTTATTCAGGCTCGCTTTCAACTCTGGCTTCGTTATTCTCTAA--CTTA 23549 Query 187 ---TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAA 243 ||||| || | ||||||| | | |||| | ||| ||| ||| || | | Sbjct 23550 ACCTGCCATTGCCTACAAGTCGCCGGCTCATTCTTCAACAGGCACGAGGTTAAACGTTTT 23609 Query 244 AGTGGG-CTCCCACTGCTTGTACGCATACGG-TTTCAGGATCTA-TTTCACTCCCCTCTC 300 ||| | || || ||||||||| || || || ||||| | |||| ||||||||||||| | Sbjct 23610 AGTCGTTCTTCCTCTGCTTGTAAGCTTAGGGGTTTCATGTTCTAATTTCACTCCCCTC-C 23668 Query 301 CGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATT 360 ||||||||||||| |||||||||||||||||| |||||||||||||| ||| | |||| Sbjct 23669 CGGGGTTCTTTTCAGCTTTCCCTCACGGTACTATTTCACTATCGGTCATCCAGGAATATT 23728 Query 361 TAGCCTT-GGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTC 419 ||||||| |||| |||||| | || ||||| || | |||| |||| || | |||||| Sbjct 23729 TAGCCTTACGAGG-TGGTCCTCGCAGATTCACACCGAATTTCACGTGTTCGATGCTACTC 23787 Query 420 G 420 | Sbjct 23788 G 23788 >seq43 Length=27552 Score = 84.2 bits (92), Expect = 5e-14 Identities = 84/107 (79%), Gaps = 3/107 (3%) Strand=Plus/Minus Query 270 ACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGT 329 ||||||||| | ||||| ||||| | | || | |||||| | |||||||||||||| Sbjct 13247 ACGGTTTCAAGTACTATTGCACTCTCTTTTCAAAG-TTCTTTGCATCTTTCCCTCACGGT 13189 Query 330 ACTAGTTCACTATCGGTCAGTCAGTA--GTATTTAGCCTTGGAGGAT 374 ||| |||| ||||||||| || || ||||||||||||||| ||| Sbjct 13188 ACTTGTTCGCTATCGGTCTCTCTTTACGGTATTTAGCCTTGGATGAT 13142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241598547328