Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq17 246 7e-63 >seq17 Length=139726 Score = 246 bits (272), Expect = 7e-63 Identities = 302/412 (73%), Gaps = 33/412 (8%) Strand=Plus/Plus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 |||||||||| |||||||| || ||| ||| || ||| |||||||||| |||||||| Sbjct 25491 TTTACAACCCACAGGCCTTCATCCCTCACACGGTATTGCTCCATCAGGCTTTCGCCCATT 25550 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 ||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 25551 GTGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTATCTCAGTTCCAGTGT 25610 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||||| ||||||||| |||||||||| |||||| |||| ||| |||||||||| ||| Sbjct 25611 GGCTGATCATCCTCTAAGACCAGCTACTGATCGTTGCCTTGGTAAGCCATTACCCTACCA 25670 Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGG 244 ||||||||||| | | ||||| | |||| || | || ||| Sbjct 25671 ACTAGCTAATCAGCCGCGAGCTCATC------TTCCAGGC----AGATAAATCT-TTTCA 25719 Query 245 TC--TTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGG 302 | | | | |||| ||| ||||| | |||||||| ||||||||||||| ||| Sbjct 25720 CCAATAATGGC-ATATGGGGTTTTAGCAATCGTTTCCAACTGTTATCCCCCTCCTAGAGG 25778 Query 303 CAGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCC 362 || ||| || |||||||||||||||||||| || | || Sbjct 25779 TAGATTCTCACGTGTTACTCACCCGTCCGCCACT---------AGAATAAA--------- 25820 Query 363 TGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 || ||| ||||||||||||||||||| | ||||||||||| | ||||| Sbjct 25821 -ATTCTCGTACGACTTGCATGTGTTAGGCATACCGCCAGCGTTAATCCTGAG 25871 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222398569792