Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq43 167 4e-39 seq46 131 3e-28 >seq43 Length=27552 Score = 167 bits (184), Expect = 4e-39 Identities = 200/265 (75%), Gaps = 10/265 (4%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTAT-CGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 ||||||||||| ||||| || | | |||||||||| ||||||||||||||||||| Sbjct 11421 CTTCTTAGAGGTACTATTCGTTTTTCACGGATGGAAGTTGTAGGCAATAACAGGTCTGTG 11480 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC- 189 |||||||| ||||| |||||| ||||||| |||||||||| | ||| ||||| || Sbjct 11481 ATGCCCTTTGATGTCCTGGGCTGCACGCGGGCTACACTGATGCATTCAAAGAGTTTTTCT 11540 Query 190 ACCT----TGGCCGGA--AGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAG 243 |||| || | || | ||||||||||| | ||| | ||||||| ||||| | Sbjct 11541 ACCTACTCTGACAAGAGTTATTTTGGGTAATCTT-TGAAAGTGCATCGTGCTTGGGATTG 11599 Query 244 AGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGC 303 | || || | | || | |||||||||| ||| |||| |||| ||||||| | || Sbjct 11600 AATTCTGTAACT-GTATTCATGAACGAGGAATTCCTTGTAAACGCGAGTCATCAACTTGC 11658 Query 304 GTTGATTACGTCCCTGCCCTTTGTA 328 ||||| ||||||||||||||||||| Sbjct 11659 GTTGAATACGTCCCTGCCCTTTGTA 11683 >seq46 Length=146086 Score = 131 bits (144), Expect = 3e-28 Identities = 200/274 (73%), Gaps = 21/274 (8%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTAT-CGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 ||||||||||| ||||| || | | |||||||||| ||||||||||||||||||| Sbjct 549 CTTCTTAGAGGTACTATTCGTTTTTCACGGATGGAAGTTGTAGGCAATAACAGGTCTGTG 490 Query 131 ATGCCC-TTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189 |||||| || ||||| |||||| ||||||| |||||||||| | ||| ||||| || Sbjct 489 ATGCCCTTTTGATGTCCTGGGCTGCACGCGGGCTACACTGATGCATTCAAAGAGTTTTTC 430 Query 190 -ACCT----TGGCCGGA--AGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATA 242 |||| || | || | ||||||||||| | ||| | ||||||| ||||| Sbjct 429 TACCTACTCTGACAAGAGTTATTTTGGGTAATCTT-TGAAAGTGCATCGTGCTTGGGATT 371 Query 243 GAGCATTG--CAATTATTGCTCTTCAAC---GAGGAATGCCTAGTAA---GCGCGTGTCA 294 || || ||| | | || | ||| ||||||| ||| |||| ||| |||||| Sbjct 370 GAATTCTGATCAACT-GTATTCATGAACTGAGAGGAATTCCTTGTAAAACGCGAGTGTCA 312 Query 295 --TCAGCACGCGTTGATTACGTCCCTGCCCTTTG 326 ||| | ||||||| ||||||||||||||||| Sbjct 311 GCTCAACTTGCGTTGAATACGTCCCTGCCCTTTG 278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947198891776