Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq17 185 3e-44 >seq17 Length=139726 Score = 185 bits (204), Expect = 3e-44 Identities = 370/533 (69%), Gaps = 19/533 (4%) Strand=Plus/Minus Query 34 AGACCCGAAACCAAGTGATC-TACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGG 92 ||||||||| || |||||| || ||||| ||||||||||| | |||||||| ||| Sbjct 23484 AGACCCGAACCCGGGTGATCCTAGCCATGACCAGGATGAAGCTTAGGTAACACTAAGTGG 23425 Query 93 AGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGC 152 ||||||||||| ||| |||||||||||| || ||||||| ||||| ||| ||||||| || Sbjct 23424 AGGTCCGAACCGACTGATGTTGAAAAATCAGCGGATGAGTTGTGGCTAGAGGTGAAATGC 23365 Query 153 TAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAG--GTAGTGCCTCAAG- 209 || | ||| ||| |||||||||||| |||||| || || | || | | | | Sbjct 23364 CAATCGAACCCGGAGCTAGCTGGTTCTCCCCGAAATGCGTTGAGGCGCAGCGGTTGATGC 23305 Query 210 TATCACCATCGGGGGTAGAGCACTGTTATGGCTAGGGGGTCATTGCGACT--TACCAAAC 267 ||| | | |||| ||||||||| | || | || | || | | ||||||| Sbjct 23304 TATAGTC--TAGAGGTAAAGCACTGTT-TCACT--GAGGGCTATGAAAATAGTACCAAAT 23250 Query 268 CATTGCAAACTCCGAATGC-GCATCAGTTTTACCGCGGGAGTGAGGGCATGGGTGCTAAG 326 |||||||| |||||| || || | | | |||||| ||||| | |||| Sbjct 23249 TGAGGCAAACTCTGAATGCTAGATGTGTAATTCAAC--CAGTGAGACTATGGGGGATAAG 23192 Query 327 GTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTAAGG-CCCCGAAATGACAGCTA 385 ||||| | ||||| || | || || | || ||||| |||| |||| | ||| Sbjct 23191 CTCCGTAGTCAAGAGGGAAACAGCCCAGATCACCATTTAAGGCCCCCTAAATAATTACTA 23132 Query 386 AGTTAAACTAACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCAT 445 ||| || || |||| || | |||||| | |||| ||| |||| ||||||| || Sbjct 23131 AGTGGAA--AAGAAAGTGGGAACACAAAGACAACCAGGAGGTTTGCTTAGAAGCAG-CAA 23075 Query 446 TCATTTAAAGAGTGCGTAACAGCTCACTAGTCGAGGAGTCGGGCGTGGATAATAATCGGG 505 || |||||||||||||||| |||||||| ||| || || || | || ||| | ||| Sbjct 23074 TCCTTTAAAGAGTGCGTAATAGCTCACTGGTCAAGTGATCCTGCATCGAAAATTAATGGG 23015 Query 506 TATTAAGTTGTCTACCGAAGCAGTGGGATCATTTATATGATCGGTAGGGGAGC 558 | ||||| | | ||||| ||| ||| || | |||||||||||||| Sbjct 23014 -ACTAAGTAATTTGCCGAAAATGTGAGATGTTTCTAAACATCGGTAGGGGAGC 22963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689598023168