Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq43 257 5e-66 seq46 185 3e-44 seq42 87.8 5e-15 >seq43 Length=27552 Score = 257 bits (284), Expect = 5e-66 Identities = 371/514 (72%), Gaps = 36/514 (7%) Strand=Plus/Minus Query 5 TCATTCCAATTACA--AGACCCAAAAGAGCCCTGTATCAGT-ATTTATTGTCACTACCTC 61 |||||||||| | | | ||| || | || | |||| || |||| ||||| ||||||| Sbjct 10538 TCATTCCAATAAGATAACACCGAATTGTGCTATCTATCGGTGATTTCTTGTCGCTACCTC 10479 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGAT--GTGGTAGCCGT 119 || ||||| |||||||||||||||||||||||||||| ||||||||| ||||||||| | Sbjct 10478 CCTGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCATCCTTGGATCCGTGGTAGCCAT 10419 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 ||||||||||||||||||||||||||||| ||||||||||||||||| | |||| ||| Sbjct 10418 CTCTCAGGCTCCCTCTCCGGAATCGAACCCCAATTCCCCGTTACCCGTCAACACCACGGT 10359 Query 180 AGGCCACTATCCTACCATC-GAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGG 238 ||||| | |||||||| || ||||||||||||||||| ||| || | | ||| | Sbjct 10358 AGGCCTCGATCCTACCGTCAAAAAGTTGATAGGGCAGATATTCAAACAATGCGTCGATAG 10299 Query 239 CTCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAG-------GAGCCCCGAAG 291 || | || | || | || |||| |||| || |||| || | ||| Sbjct 10298 TATAAAACTAT-CAATCCACAAAATTATCATGATTCCACAAGACTTGTATGTCCACAAAG 10240 Query 292 G---------GCGTTGGTTTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTT 342 | | || || || ||||||| | || ||| || ||| Sbjct 10239 GAACATACAAGGGTAGG--GATTCACTAATAAGTGCA--TGGTCCAAA---AAATTTTGG 10187 Query 343 A----GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAA 398 | ||||||||||||||||| ||||| | ||||||||||||| ||| | || Sbjct 10186 ACCGGGCATGTATTAGCTCTAGCATTACTAGGGTTATCCATGTA-AAAGAAAACATTGTG 10128 Query 399 TAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTA 458 || | ||||||| ||||||||||||||| |||| || | || | | ||||||||| Sbjct 10127 TAGATTATAACTGTTTTAATGAGCCATTCACAGTCTCGCCATAAATTTGGCTTATACTGG 10068 Query 459 GACATGCATGGCTTAAT-CTTTGAGACAAGCATA 491 | ||||||||||||| |||||||||||||||| Sbjct 10067 CATCTGCATGGCTTAATCCTTTGAGACAAGCATA 10034 >seq46 Length=146086 Score = 185 bits (204), Expect = 3e-44 Identities = 186/232 (80%), Gaps = 16/232 (7%) Strand=Plus/Plus Query 5 TCATTCCAATTACAAGACC-CAAAAGAGCCCTGTA-TCAGTATTTATTGTCACTACCTCC 62 |||||||||||| | | | ||| | || | || || |||||| ||||| |||||||| Sbjct 1444 TCATTCCAATTAAGATAACACAAGTGTGCTATCTAATCGGTATTTCTTGTCGCTACCTCC 1503 Query 63 CCGTGTC--GGGATTGGGTAATTTGCGCGCCTGCTGCCT---TCCTTGGATGTGGTAGCC 117 | ||||| || |||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1504 CTGTGTCACGGAATTGGGTAATTTGCGCGCCTGCTGCCGAACTCCTTGGATGTGGTAGCC 1563 Query 118 GTTTCTCAGGCTCCCTCTCCGGAA-TCGAACCCTA-ATTCCCCGTT---ACCCGTTGATA 172 | ||||||||||||||||||||| |||||||| | |||||||||| ||||| | | Sbjct 1564 ATCTCTCAGGCTCCCTCTCCGGAATTCGAACCCCAGATTCCCCGTTGAGCCCCGTCAACA 1623 Query 173 C---CATGGTAGGCCACTATCCTACCATC-GAAAGTTGATAGGGCAGAAATT 220 | | |||||||| | |||||||| || ||||||||||||||||| ||| Sbjct 1624 CCCACGCGGTAGGCCTCGATCCTACCGTCAAAAAGTTGATAGGGCAGATATT 1675 Score = 84.2 bits (92), Expect = 7e-14 Identities = 94/123 (76%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 370 GGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGC 429 ||||||||||||| ||| | || || | ||||||| ||||||||||||||| | Sbjct 1850 GGTTATCCATGTAA-AAGAAAACATTGTGTAGATTATAACTGTTTTAATGAGCCATTCAC 1908 Query 430 AGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAAT-CTTTGAGACAAGC 488 ||| || | || | | ||||||||| | ||||||||||||| ||||||||||||| Sbjct 1909 AGTCTCGCCATAAATTTGGCTTATACTGGCATCTGCATGGCTTAATCCTTTGAGACAAGC 1968 Query 489 ATA 491 ||| Sbjct 1969 ATA 1971 >seq42 Length=10375 Score = 87.8 bits (96), Expect = 5e-15 Identities = 117/155 (75%), Gaps = 12/155 (8%) Strand=Plus/Minus Query 344 GCATGTATTAGCTCTAGAATTACCACGGTT--ATCCATGTAGTAAGGTACTATCAAATAA 401 ||||||||||||||||| ||||| | |||| |||||||| ||| | || || Sbjct 10100 GCATGTATTAGCTCTAGCATTACTAGGGTTGATTCCATGTA--AAGAAAACATTGTGTAG 10043 Query 402 ACGATAACTGATTTAATG-AGCCATTCGCAGTTTCACTGTATAGATT---GCTTATACTT 457 | ||||||| ||||||| |||||||| |||| || | ||| ||| ||||||||| Sbjct 10042 ATTATAACTG-TTTAATGCAGCCATTCACAGTCTCGC--CATAAATTTGGGCTTATACTG 9986 Query 458 AGACATGCATGGC-TTAATCTTTGAGACAAGCATA 491 | |||||||| |||||| |||||||||||||| Sbjct 9985 GCATCTGCATGGCTTTAATCCTTGAGACAAGCATA 9951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510398232832