Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq89 203 3e-47 seq74 96.9 3e-15 >seq89 Length=114172 Score = 203 bits (224), Expect = 3e-47 Identities = 390/555 (70%), Gaps = 25/555 (5%) Strand=Plus/Minus Query 61097 TGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACA 61156 |||||||| || |||||| |||||||| || || || ||||| ||||| ||||| Sbjct 97510 TGTACAAACGTGCAGAAGCTAGTTTCTGGACAGTCGAAGAAGTCGACTTGTCTCAAGACT 97451 Query 61157 TGAATGACTGGGAG--CGTTTATCGAGCGGT-GAACAACATTTCATTAAACATGTGTTGG 61213 || || ||||| || || | || ||||| || ||||| || || |||| Sbjct 97450 TGCGGGATTGGGAATTCGCTT--CAGGCTTCAGAACAGCACTTCATATCCCACGTTTTGG 97393 Query 61214 CGTTCTTTGCCGCTTCGG--ACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCA 61271 | |||||||| ||||||| | || ||||| ||||| || || | |||||| ||| Sbjct 97392 CTTTCTTTGCTGCTTCGGGTATGGCATCGTGAATGAAAACTTGGCAGCTCGTTTCA-GCA 97334 Query 61272 G-GAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATG 61330 || || ||||| | || ||||||||||| || ||||| || | || ||||| |||| Sbjct 97333 CCGAAGTACAAGTCCCCGAAGCGCGTTGTTTTTATGGCTTTCAACTGGCGATGGAAAATG 97274 Query 61331 TCCACTCGGAGATGTACAGTGTT-CTCATCGATACGTACATCAGGGAGCGGGCG--GAA- 61386 | |||||||| ||||| | ||| || || || ||||| || | ||| | || ||| Sbjct 97273 TACACTCGGAAATGTAT-GCGTTGCTGATAGACACGTATATTCGAGAGGTGTCGAAGAAA 97215 Query 61387 --CGTGAACGATTGTTCAATGCCATCGAGA-CGATACCGGCGGTGAAGCGGAAAGCGGAT 61443 ||| ||| ||||| |||||| || | | | || ||| |||| | || |||||| Sbjct 97214 AGCGT---CGACTGTTCTTTGCCATTGAAAACCTTCCCTGCG-TGAAAAG-AAGGCGGAT 97160 Query 61444 TGGGCCTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTT 61503 ||| | || || ||||| | ||| | || |||| || || || | || ||| Sbjct 97159 TGGTCGTTGAAATGGATT-CGAGTGTT-CTCATAGTTTTGCCGAGCGTCTGGTTGCTTTT 97102 Query 61504 GCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAA 61563 || | |||||| || |||| || ||| || |||| || | ||||||||||||||| Sbjct 97101 GCAGCGGTCGAAGGGATATTCTTTTCTGGTTCTTTTGTTCCA-TATTTTGGTTGAAGAAA 97043 Query 61564 CGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATG 61623 || || | ||||| || |||||||| |||||||||||||||||| || || ||| || Sbjct 97042 CGGGGGTTGATGCCTGGACTGACCTTTTCCAATGAGTTGATATCACGAGATGAAGGCTTG 96983 Query 61624 CATTGTGATTTTGCT 61638 |||||||| |||||| Sbjct 96982 CATTGTGAATTTGCT 96968 >seq74 Length=163707 Score = 96.9 bits (106), Expect = 3e-15 Identities = 318/485 (66%), Gaps = 7/485 (1%) Strand=Plus/Plus Query 66328 TTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCG 66387 |||||| || |||||| | ||| || | ||| | | || || | ||| |||||||| Sbjct 151741 TTCTACTCGCTTCATAAACAAATCGGGAACCCATAAACCATAAAATAAATCTCGTGCTCG 151800 Query 66388 TTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCA 66447 | ||| || | || ||||| || | ||| || | |||||||| |||||||||||| Sbjct 151801 ATTCTCTTCCTTTCCATGATTCTTTCTCAAATCTAAAAACTCAAAATGGTCGGCATGCCA 151860 Query 66448 TGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCG 66507 || |||| || || || || | || | | || || || ||||| ||||| || | Sbjct 151861 AGGCTCCAAATAAATAGCAAAAGCTCCTTTTCTCTTTCCTCCTCCTTGATCGACATATCT 151920 Query 66508 AGCGACATTGTTGAAGACACGCAACAT-CGGTACGAGCCCGTTAGATTTGCCATTGGTGC 66566 || || || || || || | ||| || || | || || || | |||||||| | Sbjct 151921 CGCAGTATCATTAAATACTCGAAGCATAGGGAACAATGCCATTGGAAGTTCCATTGGTAC 151980 Query 66567 CGTCG-ATGGGGGATCCTCGT-GCCCGTATATCGTGAACATTCAGACCAATACCACCGGC 66624 | ||| || ||| | || || || || |||||||| || |||||||| || || Sbjct 151981 C-TCGAATATACGAT-TTGGTAGCTCGAATGTCGTGAACTGCCAATCCAATACCGCCAGC 152038 Query 66625 CGTCTTCGAGATGGCAGCACAATCGGCCACTGTCCGGAATATGCCGTCAATGGAGTCACC 66684 | || || || ||||||| || || | ||||| ||||| ||||| | Sbjct 152039 ACTTTTAGAAATCACAGCACAGCTCTTCAAAGTATCATAAATGCCTTCAATAGAGTCTTC 152098 Query 66685 CTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGC-CGAGAAGA 66743 | | || || || | | | || ||| | || ||| ||||| |||| ||| | Sbjct 152099 CGTCATAGTGAGCAAGAAACAAGAAGATAACTGAGGTCGAGGTGTACCGGCATTTGAACA 152158 Query 66744 GGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGAC-ATGTAATTGTACGTCTCGATGACA 66802 ||||| | ||| |||||||| || | |||||| ||||||| || ||||| | ||| Sbjct 152159 AAGTGGGCGAAGCATGCGTAAAATATTTTCGAGACAATGTAATCATAAGTCTCCAATACA 152218 Query 66803 GCATC 66807 || || Sbjct 152219 GCTTC 152223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397567433092880