Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_031903.1 Length=172345 Score E Sequences producing significant alignments: (Bits) Value seq17 378 8e-100 >seq17 Length=139726 Score = 378 bits (418), Expect = 8e-100 Identities = 702/1008 (70%), Gaps = 33/1008 (3%) Strand=Plus/Plus Query 161515 TTCGATGTCCTTGACGACTGGCTTAAACGAGATCGTTTCGTTTTTG-TTGGCTGGTCTGG 161573 |||||| | |||| || ||||| ||||| ||||| || || ||| |||| ||||| || Sbjct 27231 TTCGATTTAGTTGATGATTGGCTAAAACGTGATCGCTTTGTATTTAATTGGATGGTCAGG 27290 Query 161574 --------ACTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGC 161625 |||| | ||| |||| | | || | ||| |||| |||| |||| || Sbjct 27291 TTTGAATTACTTTTCCTTGTTCCTAAACCCTAGCC--CTA--GGCGCTTGGTTTACAGGT 27346 Query 161626 ACGACTTTCGCTACGAGCTGGTATACCCATGGACTCGCTAGTTCCTATCTTGAGGGTGCA 161685 || ||||| | ||| |||||||| ||||| | ||| ||| ||| | || || Sbjct 27347 ACAACTTT-GTTACTTCTTGGTATACTCATGGTTTAGCTTCTTCTTATTTAGAAGGATGT 27405 Query 161686 AATTTTCTTACAGCGGCAGTTAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTT 161745 |||||| | || || ||||| | || || | |||||| || || | || || Sbjct 27406 AATTTT-TAACTGCTGCAGTATCAAGCCCTGCAAATAGTATGGGACACTCATTACTATTT 27464 Query 161746 CTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGG 161805 | ||||| || || |||||||| ||||| || ||| ||| |||| || | ||| Sbjct 27465 -TATGGGGACCAGAAGCTCAAGGTGATTTTACTAGATGGTGTCAAATTGGAGGTTTATGG 27523 Query 161806 AATTTTGTGGCGCTCCACGGGGCTTTCGCTCTGATTGGATTCATGCTT-CGTCAGTTTGA 161864 | ||| || | || || ||||| | | | | | || || || ||||| ||||| Sbjct 27524 ACATTTACAGCTTTACATGGTGCTTTTGGAATTAATAGGTTT-TGTTTACGTCAATTTGA 27582 Query 161865 ACTTGCTCGTCTTATCGGTATCCGTCCTTACAATGCTATTGCTTTCTCTGGTCCTATTGC 161924 | | || | | | || || | || || ||||| || ||||| || || || ||||| Sbjct 27583 AATAGCAAGATTAGTAGGAATTAGACCATATAATGCAATAGCTTTTTCGGGACCAATTGC 27642 Query 161925 TGTTTT-TGTCAGCGTCTTTCTCATATATCCTCTGGGACAGTCGTCCTGGTTCTTCGCGC 161983 ||||| | |||| | ||||| || ||||| || ||||| | ||||| | || | Sbjct 27643 AGTTTTGTTTCAG--TATTTCTTATTTATCCACTTGGACAAGCTAGTTGGTTTT--GCTC 27698 Query 161984 CATCGTTTGGGGTTGCCGCTATTTTCAGGTTCTTACTTT-TCCTACAAGGTTTCCACAAT 162042 | ||||| ||||| ||||| || || || || ||| | | ||||| ||||| || Sbjct 27699 CTAGTTTTGGAGTTGCAGCTATCTTTAGATT--TATTTTATTTTGCAAGGCTTCCATAAC 27756 Query 162043 TGGACGCTTAATCCGTTCCACATGATGGGTGTCGCAGGTATCTTGGGTGGTGCTTTGCTC 162102 ||||| | ||||| ||||| ||||||||||| || || || | ||||| || || | Sbjct 27757 TGGACTTTAAATCCATTCCATATGATGGGTGTTGCTGGAATACTTGGTGGAGCATTATTG 27816 Query 162103 TCTGCTATTCACGGTGTGACTGTTGAAAACACGCTCTACCAAGATGGTGAACAAGCAAAT 162162 | |||||||| || | ||||| ||||| || | | ||||||| ||| || ||| Sbjct 27817 TGCGCTATTCATGGAGCAACTGTAGAAAATACCTTATTTGAAGATGGCGAAGCTGCTAAT 27876 Query 162163 ACTTTCAAGGCTTTTGACTCTACGCAAGAGGAGGAGACTTACTCGATGGTTACTGCGAAC 162222 ||||||| |||||| | || ||| || || ||||| || |||||||| || || Sbjct 27877 ACTTTCAGAGCTTTTACACCAACACAATCAGAAGAAACTTATTCAATGGTTACAGCTAAT 27936 Query 162223 CGTTTCTGGTCACAGATCTTCGGTATTGCTTTTAGTAATAAGCGTTGGTTGCATTTCTTT 162282 ||||| |||||||| || || ||| |||||||| |||||| | ||| | ||||||||| Sbjct 27937 CGTTT-TGGTCACAAATTTT-GGTGTTGCTTTTC-TAATAAAAGATGGCTACATTTCTTT 27993 Query 162283 --ATGCTCTTCGTTCCCGTCATGGGTCTCTGGACAAGTTCTATCGGTATTATTGGACTCG 162340 ||||| || || || || | || | |||||||||||||| |||||||| ||||| | Sbjct 27994 GAATGCTATTTGTGCCAGTTACTGGATTATGGACAAGTTCTATTGGTATTATAGGACTTG 28053 Query 162341 CTCTTAATCTTCGTGCTTACGACTTTGTATCTCAGGAGATTCGTGCAGCGGAGGATCCTG 162400 | | ||| | ||||| || || || || ||||| || | ||||| || |||||||| | Sbjct 28054 CATTAAATTTACGTGCATATGATTTCGTTTCTCAAGAATTACGTGCCGCAGAGGATCCAG 28113 Query 162401 AATTTGAAACCTTCTACACCAAGAATATCCTCTTGAATGAAGGTCTTCGTGCATGGTTGG 162460 ||||||||||||| || || || ||| | ||| | ||||||||| | | |||||| ||| Sbjct 28114 AATTTGAAACCTTTTATACTAAAAATTTACTCCTAAATGAAGGTATAAGAGCATGGATGG 28173 Query 162461 CACCAGTTGA-TCAACCGCATGAGAACTTTGTATTCCCTGAGGAAGTT 162507 || || || |||||| ||||| || ||||||||||| ||||| ||| Sbjct 28174 CAACACAAGATTCAACCACATGA-AAATTTGTATTCCCAGAGGAGGTT 28220 Score = 113 bits (124), Expect = 5e-20 Identities = 172/239 (72%), Gaps = 6/239 (3%) Strand=Plus/Plus Query 160960 GATGA-TCAATATGTCCTTGACGCTGCTGATGAAGCAGGTGTTGACGGACCCTACTCCTG 161018 ||||| ||||||| | | || || ||||| ||| ||| | || ||||| || || Sbjct 56909 GATGAATCAATATATATTAGATGCAGCTGAAGAACAAGGATTAGATCTCCCCTATTCTTG 56968 Query 161019 TCGTGCTGGT--GCTTGCTCTACTTGTGCTGGTAAGAT-TGAGAGTGGTACTGTAGATCA 161075 | | || || || || |||||||| || || || | | ||| | | |||||||| Sbjct 56969 TAGAGCAGGGAAGCATGTTCTACTTGCGCAGGCAAACTCTTAGAAGGAGAA-GTAGATCA 57027 Query 161076 ATCTGATCAATCTTTCCTGGATGATGATCAACTTGAATCAGGATTTGTCCTGACCTGCGT 161135 ||||||||| || || | |||||||||||| | || |||||||||| || ||||| || Sbjct 57028 ATCTGATCAGTCCTTT-TAGATGATGATCAAGTAAAAGCAGGATTTGTACTAACCTGTGT 57086 Query 161136 TGCTTATCCCACTTCTGATGTAACTATTCTTGCCGAGCAAGAAGAGTCTCTTTACTAAA 161194 ||| ||||| |||||| ||| ||| ||| | | | |||||||| || | ||||||| Sbjct 57087 TGCATATCCTACTTCTAATGCAACAATTTTAACTCATCAAGAAGAATCATTATACTAAA 57145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 551375193612600