Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_031906.1 Length=198190 Score E Sequences producing significant alignments: (Bits) Value seq17 383 2e-101 >seq17 Length=139726 Score = 383 bits (424), Expect = 2e-101 Identities = 712/1021 (70%), Gaps = 27/1021 (3%) Strand=Plus/Plus Query 189997 TTGATGACTGGCTTAAACGAGATCGCTTTGTCTTTG-TGGGTTGGTCTGGATT-ACTTCT 190054 ||||||| ||||| ||||| ||||||||||| ||| | || ||||| || || | || Sbjct 27241 TTGATGATTGGCTAAAACGTGATCGCTTTGTATTTAATTGGATGGTCAGGTTTGAATTAC 27300 Query 190055 TTTTCCCACTGCTTAT---CTCGCAATTGGTGGCTGGCTTACTGGCACGACGTTTGCTAC 190111 |||||| | | || || || | || | ||| |||| || || || |||| ||| Sbjct 27301 TTTTCCTTGTTCCTAAACCCTAGCCCTAGGCGCTTGGTTTACAGGTACAAC-TTTGTTAC 27359 Query 190112 AAGCTGGTACACCCACGGACTCGCAAGTAGTTACCTTGAGGGTGCTAATTTTCTTACAGC 190171 ||||| || || || | || | ||| | || || ||||||| | || || Sbjct 27360 TTCTTGGTATACTCATGGTTTAGCTTCTTCTTATTTAGAAGGATGTAATTTT-TAACTGC 27418 Query 190172 GGCTGTGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTT--GGGGTCCT 190229 || || |||| ||||| || |||||| || ||| | | ||| ||| |||| || Sbjct 27419 TGCAGTATCAAGCCCTGCAAATAGTATGGGACA--CTCAT-TACTATTTTATGGGGACCA 27475 Query 190230 GAATCTCAAGGCGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGGCTTTTGTGGCG 190289 ||| ||||||| ||||| || ||| ||| |||| || | ||| | ||| || Sbjct 27476 GAAGCTCAAGGTGATTTTACTAGATGGTGTCAAATTGGAGGTTTATGGACATTTACAGCT 27535 Query 190290 CTCCACGGGGCTTTCGCTCT-AATTGGATTCATGCTT-CGTCAGTTTGAACTGGCACGTC 190347 | || || ||||| | | ||| || || || || ||||| |||||| | ||| | Sbjct 27536 TTACATGGTGCTTTTGGAATTAATAGGTTT--TGTTTACGTCAATTTGAAATAGCAAGAT 27593 Query 190348 TCATCGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTA 190407 | | || || | || || ||||| || || || || || || || || ||||| ||| Sbjct 27594 TAGTAGGAATTAGACCATATAATGCAATAGCTTTTTCGGGACCAATTGCAGTTTT-GTTT 27652 Query 190408 GCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTCTTCGCGCCATCCTTCGGTG 190467 || ||||| || || || || || ||| | |||||||| | || || || || | Sbjct 27653 CAGTATTTCTTATTTATCCACTTGGACAAGCTAGTTGGTTTT--GCTCCTAGTTTTGGAG 27710 Query 190468 TGGCAGCGATCTTCCGCTTCCTCCTCTTCTTGCAGGGCTTCCATAACTGGACGCTGAACC 190527 | ||||| ||||| | || | | || ||||| ||||||||||||||||| | || | Sbjct 27711 TTGCAGCTATCTTTAGATTTATTTTATT-TTGCAAGGCTTCCATAACTGGACTTTAAATC 27769 Query 190528 CCTTCCACATGATGGGTGTTGCAGGTATCCTGGGAGGAGCACTACTGTCAGCAATCCATG 190587 | ||||| |||||||||||||| || || || || |||||| || ||| || || |||| Sbjct 27770 CATTCCATATGATGGGTGTTGCTGGAATACTTGGTGGAGCATTATTGTGCGCTATTCATG 27829 Query 190588 GTGTGACTGTAGAGAATACTTTGTATGAAGATGGTGAACAAGCAAACACGTTTAAAGCAT 190647 | | |||||||| ||||| || | ||||||||| ||| || || || || | ||| | Sbjct 27830 GAGCAACTGTAGAAAATACCTTATTTGAAGATGGCGAAGCTGCTAATACTTTCAGAGCTT 27889 Query 190648 TCGACTCTACACAAGAGGAAGAGACCTATTCGATGGTCACTGCCAACCGTTTCTGGTCTC 190707 | | |||||| ||||| || ||||| ||||| || || || ||||| ||||| | Sbjct 27890 TTACACCAACACAATCAGAAGAAACTTATTCAATGGTTACAGCTAATCGTTT-TGGTCAC 27948 Query 190708 AAATCTTTGGTGTTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTT--ATGCTCTTTGT 190765 |||| ||||||||||| || |||||| || ||| | ||||||||| ||||| ||||| Sbjct 27949 AAAT-TTTGGTGTTGC-TTTTCTAATAAAAGATGGCTACATTTCTTTGAATGCTATTTGT 28006 Query 190766 TCCTGTTATGGGTCTGTGGACTTCTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCG 190825 || |||| || | ||||| ||| || |||||||| || ||||| | || | || Sbjct 28007 GCCAGTTACTGGATTATGGACAAGTTCTATTGGTATTATAGGACTTGCATTAAATTTACG 28066 Query 190826 TGCTTATGACTTTGTATCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTCGAGACTTT 190885 ||| ||||| || || || ||||| | | || ||||| |||||||| || || || || Sbjct 28067 TGCATATGATTTCGTTTCTCAAGAATTACGTGCCGCAGAGGATCCAGAATTTGAAACCTT 28126 Query 190886 TTACACAAAAAATATACTTTTGAATGAAGGTCTTCGTTCATGGTTGGCACCTGTTGA-TC 190944 ||| || |||||| |||| | ||||||||| | | ||||| ||||| | || || Sbjct 28127 TTATACTAAAAATTTACTCCTAAATGAAGGTATAAGAGCATGGATGGCAACACAAGATTC 28186 Query 190945 AACCCCATGAGAATTTTGTATTTCCAGAAGAAGTATTGCCAAGAGGCAACGCTCTGTGAT 191004 |||| ||||| || |||||||| ||||| || || || ||| | || || || || | || Sbjct 28187 AACCACATGA-AAATTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAATGCCCTTTAAT 28245 Query 191005 A 191005 | Sbjct 28246 A 28246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634079072658000