Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_031922.1 Length=174830 Score E Sequences producing significant alignments: (Bits) Value seq17 461 8e-125 >seq17 Length=139726 Score = 461 bits (510), Expect = 8e-125 Identities = 744/1043 (71%), Gaps = 29/1043 (3%) Strand=Plus/Plus Query 163874 ACAAAGGGGGTGGTTCGATGTCCTGGACGACTGGCTTAAACGAGATCGCTTTGTCTTTG- 163932 |||||| || | |||||| | | || || ||||| ||||| ||||||||||| ||| Sbjct 27218 ACAAAGAGGTTTATTCGATTTAGTTGATGATTGGCTAAAACGTGATCGCTTTGTATTTAA 27277 Query 163933 TGGGTTGGTCTGGATT-ACTTCTTTTTCCCACTGCTTAT---CTTGCAATTGGTGGCTGG 163988 | || ||||| || || | || |||||| | | || || || | || | ||| Sbjct 27278 TTGGATGGTCAGGTTTGAATTACTTTTCCTTGTTCCTAAACCCTAGCCCTAGGCGCTTGG 27337 Query 163989 CTTACTGGTACAACGTTTGTTACCAGTTGGTACACCCACGGTCTCGCGTCTAGTTACCTT 164048 |||| |||||||| |||||||| |||||| || || ||| | || ||| ||| | Sbjct 27338 TTTACAGGTACAAC-TTTGTTACTTCTTGGTATACTCATGGTTTAGCTTCTTCTTATTTA 27396 Query 164049 GAGGGTGCTAATTTCCTTACAGCGGCTGTGTCAACGCCTGCTGATGCTATGGGTCATTCT 164108 || || |||||| | || || || || |||| ||||| || |||||| || || Sbjct 27397 GAAGGATGTAATTTT-TAACTGCTGCAGTATCAAGCCCTGCAAATAGTATGGGACA--CT 27453 Query 164109 CTTCTTCTACTTT--GGGGTCCTGAGTCTCAGGGGGACTTCATTAGGTGGTGCCAACTTG 164166 | | | ||| ||| |||| || || |||| || || || | ||| ||||| ||| ||| Sbjct 27454 CAT-TACTATTTTATGGGGACCAGAAGCTCAAGGTGATTTTACTAGATGGTGTCAAATTG 27512 Query 164167 GGGGACTCTGGGCTTTTGTGGCGTTCCACGGATCTTTCGCTCTGA-TCGGTTTCATGCTT 164225 | || | ||| | ||| || || || || |||| | | | | ||||| || || Sbjct 27513 GAGGTTTATGGACATTTACAGCTTTACATGGTGCTTTTGGAATTAATAGGTTT--TGTTT 27570 Query 164226 -CGGCAGTTTGAAATTGCACGTCTTGTAGGTATCCGTCCGTACAATGCTATTGCGTTCTC 164284 || || |||||||| ||| | | ||||| || | || || ||||| || || || || Sbjct 27571 ACGTCAATTTGAAATAGCAAGATTAGTAGGAATTAGACCATATAATGCAATAGCTTTTTC 27630 Query 164285 TGGTCCGATTGCTGTCTTTGTCAGCGTTTTCCTTATGTACCCTCTCGGGCAATCTAGTTG 164344 || || ||||| || ||||| || || ||||| || || || || ||| ||||||| Sbjct 27631 GGGACCAATTGCAGT-TTTGTTTCAGTATTTCTTATTTATCCACTTGGACAAGCTAGTTG 27689 Query 164345 GTTCTTTGCCCCCTCGTTTGGGGTCGCGGCGATCTTCAGATTCCTCTTGTTCCTCCAAGG 164404 ||| |||| || ||||| || || || ||||| ||||| | || || | ||||| Sbjct 27690 GTT--TTGCTCCTAGTTTTGGAGTTGCAGCTATCTTTAGATTTATTTTATTT-TGCAAGG 27746 Query 164405 TTTCCATAACTGGACACTCAACCCCTTCCATATGATGGGTGTTGCAGGCATCCTTGGTGG 164464 |||||||||||||| | || || |||||||||||||||||||| || || |||||||| Sbjct 27747 CTTCCATAACTGGACTTTAAATCCATTCCATATGATGGGTGTTGCTGGAATACTTGGTGG 27806 Query 164465 TGCTCTTCTCTGTGCTATTCATGGTGCTACCGTAGAGAATACTTTGTTTGAAGATGGTGA 164524 || | | || ||||||||||| || || ||||| ||||| || ||||||||||| || Sbjct 27807 AGCATTATTGTGCGCTATTCATGGAGCAACTGTAGAAAATACCTTATTTGAAGATGGCGA 27866 Query 164525 ACAATCAAATACTTTCAAGGCATTCGAGCCTACTCAAGAGGAAGAGACTTACTCGATGGT 164584 | | |||||||||| || || || || ||| ||||| ||||| || ||||| Sbjct 27867 AGCTGCTAATACTTTCAGAGCTTTTACACCAACACAATCAGAAGAAACTTATTCAATGGT 27926 Query 164585 CACTGCCAACCGCTTCTGGTCTCAGATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGTT 164644 || || || || || ||||| || | ||||||| ||||||| ||||| | ||| | Sbjct 27927 TACAGCTAATCG-TTTTGGTCACA-AATTTTGGTGTTGCTTT-TCTAATAAAAGATGGCT 27983 Query 164645 GCACTTCTTT--ATGCTCTTTGTTCCTGTCATGGGACTTTGGACAAGTTCTATTGGTATC 164702 || |||||| ||||| ||||| || || | ||| | |||||||||||||||||||| Sbjct 27984 ACATTTCTTTGAATGCTATTTGTGCCAGTTACTGGATTATGGACAAGTTCTATTGGTATT 28043 Query 164703 ATCGGTCTCGCACTCAATCTTCGTGCTTATGATTTTGTGTCTCAGGAGATTA-GAGCAGC 164761 || || || ||| | ||| | ||||| |||||||| || ||||| || |||| | || || Sbjct 28044 ATAGGACTTGCATTAAATTTACGTGCATATGATTTCGTTTCTCAAGA-ATTACGTGCCGC 28102 Query 164762 AGAGGATCCTGAATTTGAGACGTTCTATACGAAGAACATCCTCCTCAATGAAGGACTCCG 164821 ||||||||| |||||||| || || ||||| || || | ||||| |||||||| | | Sbjct 28103 AGAGGATCCAGAATTTGAAACCTTTTATACTAAAAATTTACTCCTAAATGAAGGTATAAG 28162 Query 164822 TGCCTGGATGGCTCCAGTAGA-CCAGCCACACGAATCGTTTGTATTTCCAGAGGAAGTTC 164880 || |||||||| || ||| || ||||| ||| |||||||| |||||||| ||| Sbjct 28163 AGCATGGATGGCAACACAAGATTCAACCACATGAA-AATTTGTATTCCCAGAGGAGGTTT 28221 Query 164881 TTCCGAGAGGTAACGCACTCTAA 164903 | || | || || || || ||| Sbjct 28222 TACCACGTGGAAATGCCCTTTAA 28244 Score = 91.5 bits (100), Expect = 2e-13 Identities = 130/181 (72%), Gaps = 3/181 (2%) Strand=Plus/Plus Query 50096 ATTTTGGATGCTGCAGAAGAACAAGGCGTAGACATCAATTATTCTTGTCGTGCAGG--AG 50153 || || ||||| || ||||||||||| |||| || ||||||||| | ||||| || Sbjct 56922 ATATTAGATGCAGCTGAAGAACAAGGATTAGATCTCCCCTATTCTTGTAGAGCAGGGAAG 56981 Query 50154 CATGTTCCTCTTGTGCTGGTAAAATCATTGAGGGTACTGTTGACCAGGAAGATCAATCAT 50213 ||||||| |||| || || ||| || | || || || || || ||||| || | Sbjct 56982 CATGTTCTACTTGCGCAGGCAAACTCTTAGAAGGAGAAGTAGATCAATCTGATCAGTCCT 57041 Query 50214 TTCTTGATGATGATCAACTTGAAGCTGGTTTTGTCTTGACATGTGTAGCTCGTCCTACTT 50273 || | |||||||||||| | |||| || ||||| | || ||||| || |||||||| Sbjct 57042 TT-TAGATGATGATCAAGTAAAAGCAGGATTTGTACTAACCTGTGTTGCATATCCTACTT 57100 Query 50274 C 50274 | Sbjct 57101 C 57101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559327181982800