Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Giardia_20intestinalis_20[genbank_20GCA_5F000498715.1_202013-11-25] 239 sequences; 10,703,894 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq163 199 1e-48 seq116 199 1e-48 seq109 199 1e-48 seq7 199 1e-48 seq138 197 5e-48 seq197 196 2e-47 seq49 161 3e-37 >seq163 Length=5244 Score = 199 bits (220), Expect = 1e-48 Identities = 199/256 (78%), Gaps = 4/256 (2%) Strand=Plus/Minus Query 277 CGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCG--CCAAGCCCGTT 334 ||| || ||||||||||||| ||||||||||| |||||||| ||| || ||||||| Sbjct 5124 CGGGCTGGAGTCAAGCTCAAAAGGGTCTTCTTGCCCCGCTGG--CCGGCCCTCGCCCGTT 5067 Query 335 CCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATT 394 ||| ||||| | |||| | | | |||||||||||| |||||| |||||| Sbjct 5066 CCCGAGGCTGGAGGCTCGCGGAGGCGCGGCTCGGGACAGTGGGATCCTCGTTGGTCCATT 5007 Query 395 CATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACT 454 ||||| |||| |||| ||||||||||||||||||||||||||||||||||||||| Sbjct 5006 CATGCACGTCGGAAATTGCCCGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACT 4947 Query 455 CCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAG 514 ||||||||||||| | |||| | | || |||||| |||| || ||||||||||| Sbjct 4946 CCCGCCGTTTACCAGGGCTTCGGCGGATCGCTTCACGGTGACGGTCGTGGCACTGGGCAG 4887 Query 515 AAATCACATTGCGTCA 530 ||||||| | ||| || Sbjct 4886 AAATCACGTCGCGCCA 4871 >seq116 Length=17007 Score = 199 bits (220), Expect = 1e-48 Identities = 199/256 (78%), Gaps = 4/256 (2%) Strand=Plus/Plus Query 277 CGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCG--CCAAGCCCGTT 334 ||| || ||||||||||||| ||||||||||| |||||||| ||| || ||||||| Sbjct 139 CGGGCTGGAGTCAAGCTCAAAAGGGTCTTCTTGCCCCGCTGG--CCGGCCCTCGCCCGTT 196 Query 335 CCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATT 394 ||| ||||| | |||| | | | |||||||||||| |||||| |||||| Sbjct 197 CCCGAGGCTGGAGGCTCGCGGAGGCGCGGCTCGGGACAGTGGGATCCTCGTTGGTCCATT 256 Query 395 CATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACT 454 ||||| |||| |||| ||||||||||||||||||||||||||||||||||||||| Sbjct 257 CATGCACGTCGGAAATTGCCCGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACT 316 Query 455 CCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAG 514 ||||||||||||| | |||| | | || |||||| |||| || ||||||||||| Sbjct 317 CCCGCCGTTTACCAGGGCTTCGGCGGATCGCTTCACGGTGACGGTCGTGGCACTGGGCAG 376 Query 515 AAATCACATTGCGTCA 530 ||||||| | ||| || Sbjct 377 AAATCACGTCGCGCCA 392 >seq109 Length=22084 Score = 199 bits (220), Expect = 1e-48 Identities = 199/256 (78%), Gaps = 4/256 (2%) Strand=Plus/Minus Query 277 CGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCG--CCAAGCCCGTT 334 ||| || ||||||||||||| ||||||||||| |||||||| ||| || ||||||| Sbjct 22020 CGGGCTGGAGTCAAGCTCAAAAGGGTCTTCTTGCCCCGCTGG--CCGGCCCTCGCCCGTT 21963 Query 335 CCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATT 394 ||| ||||| | |||| | | | |||||||||||| |||||| |||||| Sbjct 21962 CCCGAGGCTGGAGGCTCGCGGAGGCGCGGCTCGGGACAGTGGGATCCTCGTTGGTCCATT 21903 Query 395 CATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACT 454 ||||| |||| |||| ||||||||||||||||||||||||||||||||||||||| Sbjct 21902 CATGCACGTCGGAAATTGCCCGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACT 21843 Query 455 CCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAG 514 ||||||||||||| | |||| | | || |||||| |||| || ||||||||||| Sbjct 21842 CCCGCCGTTTACCAGGGCTTCGGCGGATCGCTTCACGGTGACGGTCGTGGCACTGGGCAG 21783 Query 515 AAATCACATTGCGTCA 530 ||||||| | ||| || Sbjct 21782 AAATCACGTCGCGCCA 21767 >seq7 Length=203469 Score = 199 bits (220), Expect = 1e-48 Identities = 199/256 (78%), Gaps = 4/256 (2%) Strand=Plus/Minus Query 277 CGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCG--CCAAGCCCGTT 334 ||| || ||||||||||||| ||||||||||| |||||||| ||| || ||||||| Sbjct 203347 CGGGCTGGAGTCAAGCTCAAAAGGGTCTTCTTGCCCCGCTGG--CCGGCCCTCGCCCGTT 203290 Query 335 CCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATT 394 ||| ||||| | |||| | | | |||||||||||| |||||| |||||| Sbjct 203289 CCCGAGGCTGGAGGCTCGCGGAGGCGCGGCTCGGGACAGTGGGATCCTCGTTGGTCCATT 203230 Query 395 CATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACT 454 ||||| |||| |||| ||||||||||||||||||||||||||||||||||||||| Sbjct 203229 CATGCACGTCGGAAATTGCCCGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACT 203170 Query 455 CCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAG 514 ||||||||||||| | |||| | | || |||||| |||| || ||||||||||| Sbjct 203169 CCCGCCGTTTACCAGGGCTTCGGCGGATCGCTTCACGGTGACGGTCGTGGCACTGGGCAG 203110 Query 515 AAATCACATTGCGTCA 530 ||||||| | ||| || Sbjct 203109 AAATCACGTCGCGCCA 203094 >seq138 Length=7403 Score = 197 bits (218), Expect = 5e-48 Identities = 196/252 (78%), Gaps = 4/252 (2%) Strand=Plus/Plus Query 281 CTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCG--CCAAGCCCGTTCCCT 338 || ||||||||||||| ||||||||||| |||||||| ||| || |||||||||| Sbjct 1 CTGGAGTCAAGCTCAAAAGGGTCTTCTTGCCCCGCTGG--CCGGCCCTCGCCCGTTCCCG 58 Query 339 TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATG 398 ||||| | |||| | | | |||||||||||| |||||| |||||||||| Sbjct 59 AGGCTGGAGGCTCGCGGAGGCGCGGCTCGGGACAGTGGGATCCTCGTTGGTCCATTCATG 118 Query 399 CGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCG 458 | |||| |||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 119 CACGTCGGAAATTGCCCGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCG 178 Query 459 CCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAAT 518 ||||||||| | |||| | | || |||||| |||| || ||||||||||||||| Sbjct 179 CCGTTTACCAGGGCTTCGGCGGATCGCTTCACGGTGACGGTCGTGGCACTGGGCAGAAAT 238 Query 519 CACATTGCGTCA 530 ||| | ||| || Sbjct 239 CACGTCGCGCCA 250 >seq197 Length=2557 Score = 196 bits (216), Expect = 2e-47 Identities = 194/249 (78%), Gaps = 4/249 (2%) Strand=Plus/Plus Query 284 GAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCG--CCAAGCCCGTTCCCTTGG 341 ||||||||||||| ||||||||||| |||||||| ||| || |||||||||| || Sbjct 3 GAGTCAAGCTCAAAAGGGTCTTCTTGCCCCGCTGG--CCGGCCCTCGCCCGTTCCCGAGG 60 Query 342 CTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGC 401 ||| | |||| | | | |||||||||||| |||||| ||||||||||| | Sbjct 61 CTGGAGGCTCGCGGAGGCGCGGCTCGGGACAGTGGGATCCTCGTTGGTCCATTCATGCAC 120 Query 402 GTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCG 461 ||| |||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 GTCGGAAATTGCCCGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCG 180 Query 462 TTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCAC 521 |||||| | |||| | | || |||||| |||| || |||||||||||||||||| Sbjct 181 TTTACCAGGGCTTCGGCGGATCGCTTCACGGTGACGGTCGTGGCACTGGGCAGAAATCAC 240 Query 522 ATTGCGTCA 530 | ||| || Sbjct 241 GTCGCGCCA 249 >seq49 Length=78402 Score = 161 bits (178), Expect = 3e-37 Identities = 134/164 (82%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 367 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 426 |||||||||||| |||||| ||||||||||| |||| |||| ||||||||||| Sbjct 9 GGGACAGTGGGATCCTCGTTGGTCCATTCATGCACGTCGGAAATTGCCCGACGAGGCATT 68 Query 427 TGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCT 486 ||||||||||||||||||||||||||||||||||||||||| | |||| | | || || Sbjct 69 TGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCAGGGCTTCGGCGGATCGCT 128 Query 487 TCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCA 530 |||| |||| || |||||||||||||||||| | ||| || Sbjct 129 TCACGGTGACGGTCGTGGCACTGGGCAGAAATCACGTCGCGCCA 172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635196091872