Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kappaphycus_20alvarezii_20[genbank_20GCA_5F002205965.1_202017-06-23] 1,123 sequences; 349,495,466 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq280 165 1e-38 seq360 127 3e-27 seq347 127 3e-27 seq331 127 3e-27 seq262 127 3e-27 seq249 127 3e-27 seq239 127 3e-27 seq1105 122 1e-25 >seq280 Length=59840 Score = 165 bits (182), Expect = 1e-38 Identities = 195/257 (76%), Gaps = 14/257 (5%) Strand=Plus/Minus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| |||||| ||||||||||||||||| || ||||| || ||||| | || ||| Sbjct 56454 CTTAACCTTCCGGCACCGGGCAGGCGTCAGCCCCTATACTTCCGCTTAC-GCGTTAGCAG 56396 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCT--TCCCTCTATTCTCTGCGACCACCACCAGCT 118 ||||||||||||| |||||||||||| ||||||| || | ||| ||| | | ||| Sbjct 56395 AGACCTGTGTTTTTGGTAAACAGTCGCCAGTCCCTCT-TTGT-TGCAACCCTCTTCCGCT 56338 Query 119 CAACACGTCG----TTCACCAGCAGTG---GCACCCCTTCTCCCGAAGTTACGGGGCCAT 171 | || || | ||||| | | || |||| |||| |||| ||||||||| || | Sbjct 56337 CCACCCGCAGGGGTTTCAC--GTAATGAAGGCACACCTTATCCCAAAGTTACGGTGCTAA 56280 Query 172 TTTGCCGAATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACC 231 ||||| || |||||||||||| ||| | | | |||||||| ||||||| || ||||| Sbjct 56279 TTTGCAGAGTTCCTTAACCACGATTCTCTCAAGCGCCTTAGAATTCTCTTCCCACCCACC 56220 Query 232 TGTGTCGGTTTACGGTA 248 || |||||||||||||| Sbjct 56219 TGAGTCGGTTTACGGTA 56203 >seq360 Length=28839 Score = 127 bits (140), Expect = 3e-27 Identities = 170/240 (71%), Gaps = 26/240 (11%) Strand=Plus/Minus Query 2 TTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACG 61 ||| |||||| ||| ||||||||||||| || |||||| | ||||| | ||| || Sbjct 5934 TTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATTGTCTTAC-GACTTAGCGGA 5876 Query 62 GACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAA 121 ||||| ||||||| ||||||||||||| |||||| ||| ||| | | Sbjct 5875 GACCTATGTTTTTGATAAACAGTCGCTTGGGTCTATTTATTGCAACC----------CTA 5826 Query 122 CACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAAT 181 || | |||||||||||| ||||||||||||||| |||||||||| | Sbjct 5825 CAAG---------------GGCACCCCTTCTTCCGAAGTTACGGGGCTATTTTGCCGAGT 5781 Query 182 TCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTT 241 |||||| | |||| | || || ||||||||| ||||| | | ||||||||||||| Sbjct 5780 TCCTTAGAGAGAGTTATCTCGCACCCCTTAGTATATTCTACTTACCTACCTGTGTCGGTT 5721 >seq347 Length=42671 Score = 127 bits (140), Expect = 3e-27 Identities = 170/240 (71%), Gaps = 26/240 (11%) Strand=Plus/Plus Query 2 TTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACG 61 ||| |||||| ||| ||||||||||||| || |||||| | ||||| | ||| || Sbjct 33311 TTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATTGTCTTAC-GACTTAGCGGA 33369 Query 62 GACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAA 121 ||||| ||||||| ||||||||||||| |||||| ||| ||| | | Sbjct 33370 GACCTATGTTTTTGATAAACAGTCGCTTGGGTCTATTTATTGCAACC----------CTA 33419 Query 122 CACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAAT 181 || | |||||||||||| ||||||||||||||| |||||||||| | Sbjct 33420 CAAG---------------GGCACCCCTTCTTCCGAAGTTACGGGGCTATTTTGCCGAGT 33464 Query 182 TCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTT 241 |||||| | |||| | || || ||||||||| ||||| | | ||||||||||||| Sbjct 33465 TCCTTAGAGAGAGTTATCTCGCACCCCTTAGTATATTCTACTTACCTACCTGTGTCGGTT 33524 >seq331 Length=49663 Score = 127 bits (140), Expect = 3e-27 Identities = 170/240 (71%), Gaps = 26/240 (11%) Strand=Plus/Plus Query 2 TTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACG 61 ||| |||||| ||| ||||||||||||| || |||||| | ||||| | ||| || Sbjct 14631 TTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATTGTCTTAC-GACTTAGCGGA 14689 Query 62 GACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAA 121 ||||| ||||||| ||||||||||||| |||||| ||| ||| | | Sbjct 14690 GACCTATGTTTTTGATAAACAGTCGCTTGGGTCTATTTATTGCAACC----------CTA 14739 Query 122 CACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAAT 181 || | |||||||||||| ||||||||||||||| |||||||||| | Sbjct 14740 CAAG---------------GGCACCCCTTCTTCCGAAGTTACGGGGCTATTTTGCCGAGT 14784 Query 182 TCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTT 241 |||||| | |||| | || || ||||||||| ||||| | | ||||||||||||| Sbjct 14785 TCCTTAGAGAGAGTTATCTCGCACCCCTTAGTATATTCTACTTACCTACCTGTGTCGGTT 14844 Score = 127 bits (140), Expect = 3e-27 Identities = 170/240 (71%), Gaps = 26/240 (11%) Strand=Plus/Minus Query 2 TTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACG 61 ||| |||||| ||| ||||||||||||| || |||||| | ||||| | ||| || Sbjct 24532 TTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATTGTCTTAC-GACTTAGCGGA 24474 Query 62 GACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAA 121 ||||| ||||||| ||||||||||||| |||||| ||| ||| | | Sbjct 24473 GACCTATGTTTTTGATAAACAGTCGCTTGGGTCTATTTATTGCAACC----------CTA 24424 Query 122 CACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAAT 181 || | |||||||||||| ||||||||||||||| |||||||||| | Sbjct 24423 CAAG---------------GGCACCCCTTCTTCCGAAGTTACGGGGCTATTTTGCCGAGT 24379 Query 182 TCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTT 241 |||||| | |||| | || || ||||||||| ||||| | | ||||||||||||| Sbjct 24378 TCCTTAGAGAGAGTTATCTCGCACCCCTTAGTATATTCTACTTACCTACCTGTGTCGGTT 24319 >seq262 Length=94814 Score = 127 bits (140), Expect = 3e-27 Identities = 170/240 (71%), Gaps = 26/240 (11%) Strand=Plus/Minus Query 2 TTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACG 61 ||| |||||| ||| ||||||||||||| || |||||| | ||||| | ||| || Sbjct 48221 TTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATTGTCTTAC-GACTTAGCGGA 48163 Query 62 GACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAA 121 ||||| ||||||| ||||||||||||| |||||| ||| ||| | | Sbjct 48162 GACCTATGTTTTTGATAAACAGTCGCTTGGGTCTATTTATTGCAACC----------CTA 48113 Query 122 CACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAAT 181 || | |||||||||||| ||||||||||||||| |||||||||| | Sbjct 48112 CAAG---------------GGCACCCCTTCTTCCGAAGTTACGGGGCTATTTTGCCGAGT 48068 Query 182 TCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTT 241 |||||| | |||| | || || ||||||||| ||||| | | ||||||||||||| Sbjct 48067 TCCTTAGAGAGAGTTATCTCGCACCCCTTAGTATATTCTACTTACCTACCTGTGTCGGTT 48008 >seq249 Length=73938 Score = 127 bits (140), Expect = 3e-27 Identities = 170/240 (71%), Gaps = 26/240 (11%) Strand=Plus/Plus Query 2 TTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACG 61 ||| |||||| ||| ||||||||||||| || |||||| | ||||| | ||| || Sbjct 13096 TTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATTGTCTTAC-GACTTAGCGGA 13154 Query 62 GACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAA 121 ||||| ||||||| ||||||||||||| |||||| ||| ||| | | Sbjct 13155 GACCTATGTTTTTGATAAACAGTCGCTTGGGTCTATTTATTGCAACC----------CTA 13204 Query 122 CACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAAT 181 || | |||||||||||| ||||||||||||||| |||||||||| | Sbjct 13205 CAAG---------------GGCACCCCTTCTTCCGAAGTTACGGGGCTATTTTGCCGAGT 13249 Query 182 TCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTT 241 |||||| | |||| | || || ||||||||| ||||| | | ||||||||||||| Sbjct 13250 TCCTTAGAGAGAGTTATCTCGCACCCCTTAGTATATTCTACTTACCTACCTGTGTCGGTT 13309 >seq239 Length=192504 Score = 127 bits (140), Expect = 3e-27 Identities = 170/240 (71%), Gaps = 26/240 (11%) Strand=Plus/Minus Query 2 TTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACG 61 ||| |||||| ||| ||||||||||||| || |||||| | ||||| | ||| || Sbjct 98083 TTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATTGTCTTAC-GACTTAGCGGA 98025 Query 62 GACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAA 121 ||||| ||||||| ||||||||||||| |||||| ||| ||| | | Sbjct 98024 GACCTATGTTTTTGATAAACAGTCGCTTGGGTCTATTTATTGCAACC----------CTA 97975 Query 122 CACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAAT 181 || | |||||||||||| ||||||||||||||| |||||||||| | Sbjct 97974 CAAG---------------GGCACCCCTTCTTCCGAAGTTACGGGGCTATTTTGCCGAGT 97930 Query 182 TCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTT 241 |||||| | |||| | || || ||||||||| ||||| | | ||||||||||||| Sbjct 97929 TCCTTAGAGAGAGTTATCTCGCACCCCTTAGTATATTCTACTTACCTACCTGTGTCGGTT 97870 >seq1105 Length=37519 Score = 122 bits (134), Expect = 1e-25 Identities = 170/240 (71%), Gaps = 29/240 (12%) Strand=Plus/Minus Query 2 TTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACG 61 ||| |||||| ||| ||||||||||||| || |||||| | ||||| | ||| || Sbjct 37408 TTAACCTTCCGGCACTGGGCAGGCGTCAGCCCC-ATACATTGTCTTAC-GACTTAGCGGA 37351 Query 62 GACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAA 121 ||||| ||||||| ||||||||||||| |||||| ||| ||| Sbjct 37350 GACCTATGTTTTTGATAAACAGTCGCTTGG-TCTATTTATTGCAACC------------- 37305 Query 122 CACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAAT 181 ||| || |||||||||||| ||||||||||||||| |||||||||| | Sbjct 37304 ---------CACAAG----GGCACCCCTTCTTCCGAAGTTACGGGGCTATTTTGCCGAGT 37258 Query 182 TCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTT 241 |||||| | |||| | || || ||||||||| ||||| | | ||||||||||||| Sbjct 37257 TCCTTAGAGAGAGTTATCTCGCACCCCTTAGTATATTCTACTTACCTACCTGTGTCGGTT 37198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694392445579