Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kappaphycus_20alvarezii_20[genbank_20GCA_5F002205965.1_202017-06-23] 1,123 sequences; 349,495,466 total letters Query= AAMG01000599.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq280 104 2e-20 seq360 77.0 3e-12 seq347 77.0 3e-12 seq331 77.0 3e-12 seq262 77.0 3e-12 seq249 77.0 3e-12 seq239 77.0 3e-12 seq1105 73.4 4e-11 >seq280 Length=59840 Score = 104 bits (114), Expect = 2e-20 Identities = 74/85 (87%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGA 127 ||||||||||| |||||||||| |||||| ||| || ||| ||| |||||||| ||| Sbjct 56369 GCGACTGTTTACCAAAAACACAGGTCTCTGCTAACGCGTAAGCGGAAGTATAGGGGCTGA 56428 Query 128 CGCCTGCCCGGTGCCGGAAGGTTAA 152 ||||||||||||||||||||||||| Sbjct 56429 CGCCTGCCCGGTGCCGGAAGGTTAA 56453 >seq360 Length=28839 Score = 77.0 bits (84), Expect = 3e-12 Identities = 68/85 (80%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGA 127 |||||||||||| ||||||| || ||| || || || ||| | |||| ||| ||| Sbjct 5850 GCGACTGTTTATCAAAAACATAGGTCTCCGCTAAGTCGTAAGACAATGTATGGGGGCTGA 5909 Query 128 CGCCTGCCCGGTGCCGGAAGGTTAA 152 ||||||||| ||||||||||||||| Sbjct 5910 CGCCTGCCCAGTGCCGGAAGGTTAA 5934 >seq347 Length=42671 Score = 77.0 bits (84), Expect = 3e-12 Identities = 68/85 (80%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGA 127 |||||||||||| ||||||| || ||| || || || ||| | |||| ||| ||| Sbjct 33395 GCGACTGTTTATCAAAAACATAGGTCTCCGCTAAGTCGTAAGACAATGTATGGGGGCTGA 33336 Query 128 CGCCTGCCCGGTGCCGGAAGGTTAA 152 ||||||||| ||||||||||||||| Sbjct 33335 CGCCTGCCCAGTGCCGGAAGGTTAA 33311 >seq331 Length=49663 Score = 77.0 bits (84), Expect = 3e-12 Identities = 68/85 (80%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGA 127 |||||||||||| ||||||| || ||| || || || ||| | |||| ||| ||| Sbjct 14715 GCGACTGTTTATCAAAAACATAGGTCTCCGCTAAGTCGTAAGACAATGTATGGGGGCTGA 14656 Query 128 CGCCTGCCCGGTGCCGGAAGGTTAA 152 ||||||||| ||||||||||||||| Sbjct 14655 CGCCTGCCCAGTGCCGGAAGGTTAA 14631 Score = 77.0 bits (84), Expect = 3e-12 Identities = 68/85 (80%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGA 127 |||||||||||| ||||||| || ||| || || || ||| | |||| ||| ||| Sbjct 24448 GCGACTGTTTATCAAAAACATAGGTCTCCGCTAAGTCGTAAGACAATGTATGGGGGCTGA 24507 Query 128 CGCCTGCCCGGTGCCGGAAGGTTAA 152 ||||||||| ||||||||||||||| Sbjct 24508 CGCCTGCCCAGTGCCGGAAGGTTAA 24532 >seq262 Length=94814 Score = 77.0 bits (84), Expect = 3e-12 Identities = 68/85 (80%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGA 127 |||||||||||| ||||||| || ||| || || || ||| | |||| ||| ||| Sbjct 48137 GCGACTGTTTATCAAAAACATAGGTCTCCGCTAAGTCGTAAGACAATGTATGGGGGCTGA 48196 Query 128 CGCCTGCCCGGTGCCGGAAGGTTAA 152 ||||||||| ||||||||||||||| Sbjct 48197 CGCCTGCCCAGTGCCGGAAGGTTAA 48221 >seq249 Length=73938 Score = 77.0 bits (84), Expect = 3e-12 Identities = 68/85 (80%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGA 127 |||||||||||| ||||||| || ||| || || || ||| | |||| ||| ||| Sbjct 13180 GCGACTGTTTATCAAAAACATAGGTCTCCGCTAAGTCGTAAGACAATGTATGGGGGCTGA 13121 Query 128 CGCCTGCCCGGTGCCGGAAGGTTAA 152 ||||||||| ||||||||||||||| Sbjct 13120 CGCCTGCCCAGTGCCGGAAGGTTAA 13096 >seq239 Length=192504 Score = 77.0 bits (84), Expect = 3e-12 Identities = 68/85 (80%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGA 127 |||||||||||| ||||||| || ||| || || || ||| | |||| ||| ||| Sbjct 97999 GCGACTGTTTATCAAAAACATAGGTCTCCGCTAAGTCGTAAGACAATGTATGGGGGCTGA 98058 Query 128 CGCCTGCCCGGTGCCGGAAGGTTAA 152 ||||||||| ||||||||||||||| Sbjct 98059 CGCCTGCCCAGTGCCGGAAGGTTAA 98083 >seq1105 Length=37519 Score = 73.4 bits (80), Expect = 4e-11 Identities = 68/85 (80%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGA 127 |||||||||||| ||||||| || ||| || || || ||| | |||| ||| ||| Sbjct 37325 GCGACTGTTTATCAAAAACATAGGTCTCCGCTAAGTCGTAAGACAATGTATGGGGC-TGA 37383 Query 128 CGCCTGCCCGGTGCCGGAAGGTTAA 152 ||||||||| ||||||||||||||| Sbjct 37384 CGCCTGCCCAGTGCCGGAAGGTTAA 37408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476794812863