Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kappaphycus_20alvarezii_20[genbank_20GCA_5F002205965.1_202017-06-23] 1,123 sequences; 349,495,466 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq280 311 2e-82 seq360 232 2e-58 seq347 232 2e-58 seq331 232 2e-58 seq262 232 2e-58 seq249 232 2e-58 seq239 232 2e-58 seq1105 154 4e-35 seq354 116 9e-24 >seq280 Length=59840 Score = 311 bits (344), Expect = 2e-82 Identities = 331/429 (77%), Gaps = 7/429 (2%) Strand=Plus/Minus Query 2 GCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCG-GGTGGAGACAGC 60 |||| ||| | |||||||| | | || |||| |||| |||||| ||| ||| ||||||| Sbjct 56646 GCGGGTACCCGGCATCTTCGCCGGGACTTCAGTTTCGCTGAGT-TCGTGGTTGAGACAGT 56588 Query 61 GCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 120 | | ||||||||||||||||||||| ||||||||||||| ||||||||||||||||| Sbjct 56587 GGACCAGTCGTTACGCCATTCGTGCAGGACGGAACTTACCCGCCAAGGAATTTCGCTACC 56528 Query 121 TTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTA 180 ||||||||||||| ||||||||||||||| |||||||||||| | | ||||||| | Sbjct 56527 TTAGGACCGTTATAGTTACGGCCGCCGTTCACCGGGGCTTCGGTTCATCGCTTCGCTTAC 56468 Query 181 GCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTT 240 |||||| | |||||||||||||||||||||||||||| |||||||| ||| ||| Sbjct 56467 GCTAACGACTCTCCTTAACCTTCCGGCACCGGGCAGGCGTCAGCCCCTATACTTCCGCTT 56408 Query 241 TCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACC 300 || ||| |||||| |||||||||| ||||||||||| ||| | | | ||| Sbjct 56407 ACGCGTTAGCAGAGACCTGTGTTTTTGGTAAACAGTCGCCAGTCCCTCTTTGTTGCAACC 56348 Query 301 GGCATGAGCTTACGGAGCAAGTCCTTCACCCTCA--CCGGCGCACCTTCTCCCGAAGTTA 358 | | ||| ||| | |||| | | | ||| |||||| |||| |||||| Sbjct 56347 CTCTTCCGCTCCACCCGCAGGGGTTTCA-CGTAATGAAGGCACACCTTATCCCAAAGTTA 56289 Query 359 CGGTGCCTTTTTGCCTAGTTCCTT-CCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTA 417 |||||| ||||| |||||||| || ||| |||||||||||||||| | ||||||| Sbjct 56288 CGGTGCTAATTTGCAGAGTTCCTTAACCACGA-TTCTCTCAAGCGCCTTAGAATTCTCTT 56230 Query 418 CCCAACCAC 426 |||| |||| Sbjct 56229 CCCACCCAC 56221 >seq360 Length=28839 Score = 232 bits (256), Expect = 2e-58 Identities = 213/268 (79%), Gaps = 1/268 (0%) Strand=Plus/Minus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| | ||| ||||| | ||||||| ||||||| || |||||| Sbjct 6117 GCATCTTCACAGACAATTCTATTTCGCCGAGTCTCTCTCTGAGACAGTACCCAAATCGTT 6058 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 6057 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 5998 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTA-GCTAACCCCAT 191 | ||||||||||||||| ||||||||||| | ||||| | | | |||||| | Sbjct 5997 TAGTTACGGCCGCCGTTCACCGGGGCTTCAGTTGCCAGCTTTGTTTAACACTAACCAGCT 5938 Query 192 CAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCA 251 ||||||||||||||| |||||||||||| ||| |||| | ||| || || || Sbjct 5937 TCTTTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATTGTCTTACGACTTAGCG 5878 Query 252 GAGTGCTGTGTTTTTAATAAACAGTCGC 279 ||| || ||||||| |||||||||||| Sbjct 5877 GAGACCTATGTTTTTGATAAACAGTCGC 5850 >seq347 Length=42671 Score = 232 bits (256), Expect = 2e-58 Identities = 213/268 (79%), Gaps = 1/268 (0%) Strand=Plus/Plus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| | ||| ||||| | ||||||| ||||||| || |||||| Sbjct 33128 GCATCTTCACAGACAATTCTATTTCGCCGAGTCTCTCTCTGAGACAGTACCCAAATCGTT 33187 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 33188 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 33247 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTA-GCTAACCCCAT 191 | ||||||||||||||| ||||||||||| | ||||| | | | |||||| | Sbjct 33248 TAGTTACGGCCGCCGTTCACCGGGGCTTCAGTTGCCAGCTTTGTTTAACACTAACCAGCT 33307 Query 192 CAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCA 251 ||||||||||||||| |||||||||||| ||| |||| | ||| || || || Sbjct 33308 TCTTTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATTGTCTTACGACTTAGCG 33367 Query 252 GAGTGCTGTGTTTTTAATAAACAGTCGC 279 ||| || ||||||| |||||||||||| Sbjct 33368 GAGACCTATGTTTTTGATAAACAGTCGC 33395 >seq331 Length=49663 Score = 232 bits (256), Expect = 2e-58 Identities = 213/268 (79%), Gaps = 1/268 (0%) Strand=Plus/Plus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| | ||| ||||| | ||||||| ||||||| || |||||| Sbjct 14448 GCATCTTCACAGACAATTCTATTTCGCCGAGTCTCTCTCTGAGACAGTACCCAAATCGTT 14507 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 14508 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 14567 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTA-GCTAACCCCAT 191 | ||||||||||||||| ||||||||||| | ||||| | | | |||||| | Sbjct 14568 TAGTTACGGCCGCCGTTCACCGGGGCTTCAGTTGCCAGCTTTGTTTAACACTAACCAGCT 14627 Query 192 CAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCA 251 ||||||||||||||| |||||||||||| ||| |||| | ||| || || || Sbjct 14628 TCTTTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATTGTCTTACGACTTAGCG 14687 Query 252 GAGTGCTGTGTTTTTAATAAACAGTCGC 279 ||| || ||||||| |||||||||||| Sbjct 14688 GAGACCTATGTTTTTGATAAACAGTCGC 14715 Score = 232 bits (256), Expect = 2e-58 Identities = 213/268 (79%), Gaps = 1/268 (0%) Strand=Plus/Minus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| | ||| ||||| | ||||||| ||||||| || |||||| Sbjct 24715 GCATCTTCACAGACAATTCTATTTCGCCGAGTCTCTCTCTGAGACAGTACCCAAATCGTT 24656 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 24655 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 24596 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTA-GCTAACCCCAT 191 | ||||||||||||||| ||||||||||| | ||||| | | | |||||| | Sbjct 24595 TAGTTACGGCCGCCGTTCACCGGGGCTTCAGTTGCCAGCTTTGTTTAACACTAACCAGCT 24536 Query 192 CAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCA 251 ||||||||||||||| |||||||||||| ||| |||| | ||| || || || Sbjct 24535 TCTTTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATTGTCTTACGACTTAGCG 24476 Query 252 GAGTGCTGTGTTTTTAATAAACAGTCGC 279 ||| || ||||||| |||||||||||| Sbjct 24475 GAGACCTATGTTTTTGATAAACAGTCGC 24448 >seq262 Length=94814 Score = 232 bits (256), Expect = 2e-58 Identities = 213/268 (79%), Gaps = 1/268 (0%) Strand=Plus/Minus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| | ||| ||||| | ||||||| ||||||| || |||||| Sbjct 48404 GCATCTTCACAGACAATTCTATTTCGCCGAGTCTCTCTCTGAGACAGTACCCAAATCGTT 48345 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 48344 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 48285 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTA-GCTAACCCCAT 191 | ||||||||||||||| ||||||||||| | ||||| | | | |||||| | Sbjct 48284 TAGTTACGGCCGCCGTTCACCGGGGCTTCAGTTGCCAGCTTTGTTTAACACTAACCAGCT 48225 Query 192 CAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCA 251 ||||||||||||||| |||||||||||| ||| |||| | ||| || || || Sbjct 48224 TCTTTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATTGTCTTACGACTTAGCG 48165 Query 252 GAGTGCTGTGTTTTTAATAAACAGTCGC 279 ||| || ||||||| |||||||||||| Sbjct 48164 GAGACCTATGTTTTTGATAAACAGTCGC 48137 >seq249 Length=73938 Score = 232 bits (256), Expect = 2e-58 Identities = 213/268 (79%), Gaps = 1/268 (0%) Strand=Plus/Plus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| | ||| ||||| | ||||||| ||||||| || |||||| Sbjct 12913 GCATCTTCACAGACAATTCTATTTCGCCGAGTCTCTCTCTGAGACAGTACCCAAATCGTT 12972 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 12973 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 13032 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTA-GCTAACCCCAT 191 | ||||||||||||||| ||||||||||| | ||||| | | | |||||| | Sbjct 13033 TAGTTACGGCCGCCGTTCACCGGGGCTTCAGTTGCCAGCTTTGTTTAACACTAACCAGCT 13092 Query 192 CAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCA 251 ||||||||||||||| |||||||||||| ||| |||| | ||| || || || Sbjct 13093 TCTTTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATTGTCTTACGACTTAGCG 13152 Query 252 GAGTGCTGTGTTTTTAATAAACAGTCGC 279 ||| || ||||||| |||||||||||| Sbjct 13153 GAGACCTATGTTTTTGATAAACAGTCGC 13180 >seq239 Length=192504 Score = 232 bits (256), Expect = 2e-58 Identities = 213/268 (79%), Gaps = 1/268 (0%) Strand=Plus/Minus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| | ||| ||||| | ||||||| ||||||| || |||||| Sbjct 98266 GCATCTTCACAGACAATTCTATTTCGCCGAGTCTCTCTCTGAGACAGTACCCAAATCGTT 98207 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 98206 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 98147 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTA-GCTAACCCCAT 191 | ||||||||||||||| ||||||||||| | ||||| | | | |||||| | Sbjct 98146 TAGTTACGGCCGCCGTTCACCGGGGCTTCAGTTGCCAGCTTTGTTTAACACTAACCAGCT 98087 Query 192 CAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCA 251 ||||||||||||||| |||||||||||| ||| |||| | ||| || || || Sbjct 98086 TCTTTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATTGTCTTACGACTTAGCG 98027 Query 252 GAGTGCTGTGTTTTTAATAAACAGTCGC 279 ||| || ||||||| |||||||||||| Sbjct 98026 GAGACCTATGTTTTTGATAAACAGTCGC 97999 >seq1105 Length=37519 Score = 154 bits (170), Expect = 4e-35 Identities = 158/200 (79%), Gaps = 6/200 (3%) Strand=Plus/Minus Query 81 CGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATTGTTACG 140 ||||| |||||||||| |||||||||||||||||||| ||||||||||||| |||||| Sbjct 37519 CGTGC-GGTCGGAACTA--CCGACAAGGAATTTCGCTAC-TTAGGACCGTTATAGTTACG 37464 Query 141 GCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTA-GCTAACCCCATCAATTAAC 199 ||||||||| ||||||||||| | ||||| | | | |||||| | ||||| Sbjct 37463 GCCGCCGTTCACCGGGGCTTCAGTTGCCAGCTTTGTTTAACACTAACCAGCTTCTTTAAC 37404 Query 200 CTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGAGTGCTG 259 |||||||||| |||||||||||| ||| |||| | ||| || || || ||| || Sbjct 37403 CTTCCGGCACTGGGCAGGCGTCA-GCCCCATACATTGTCTTACGACTTAGCGGAGACCTA 37345 Query 260 TGTTTTTAATAAACAGTCGC 279 ||||||| |||||||||||| Sbjct 37344 TGTTTTTGATAAACAGTCGC 37325 >seq354 Length=42089 Score = 116 bits (128), Expect = 9e-24 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 11 CTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCG 70 |||||| ||||||| ||| |||||| |||| | | | ||||||| || |||| Sbjct 11123 CTGCATTTTCACAGGTATTGTAATTTCGCTGAATTTATATTTGAGACAGTAAAGCAATCG 11182 Query 71 TTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGT 130 ||||||||||| |||||| ||||| ||||||| |||||| ||||||||||| |||| | Sbjct 11183 TTACGCCATTCATGCAGGACGGAATTTACCCGTCAAGGAGTTTCGCTACCTGAGGATTCT 11242 Query 131 TATTGTTACGGCCGCCGTTTAC 152 ||| |||| ||||||||||| Sbjct 11243 TATAGTTAGAACCGCCGTTTAC 11264 Score = 116 bits (128), Expect = 9e-24 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 11 CTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCG 70 |||||| ||||||| ||| |||||| |||| | | | ||||||| || |||| Sbjct 36374 CTGCATTTTCACAGGTATTGTAATTTCGCTGAATTTATATTTGAGACAGTAAAGCAATCG 36433 Query 71 TTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGT 130 ||||||||||| |||||| ||||| ||||||| |||||| ||||||||||| |||| | Sbjct 36434 TTACGCCATTCATGCAGGACGGAATTTACCCGTCAAGGAGTTTCGCTACCTGAGGATTCT 36493 Query 131 TATTGTTACGGCCGCCGTTTAC 152 ||| |||| ||||||||||| Sbjct 36494 TATAGTTAGAACCGCCGTTTAC 36515 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260785841216