Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kappaphycus_20alvarezii_20[genbank_20GCA_5F002205965.1_202017-06-23] 1,123 sequences; 349,495,466 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq360 197 3e-48 seq347 197 3e-48 seq331 197 3e-48 seq262 197 3e-48 seq249 197 3e-48 seq239 197 3e-48 seq280 172 1e-40 >seq360 Length=28839 Score = 197 bits (218), Expect = 3e-48 Identities = 201/260 (77%), Gaps = 3/260 (1%) Strand=Plus/Plus Query 82 TTCTAACC--GGACGACGTATAACCGTTGACGGGACAGTGTCAGTCGGGCAGTTTGACTG 139 |||||||| | | | ||| |||||| | || ||||| |||| ||||||||||||||| Sbjct 6275 TTCTAACCTTGAAAGCCGT-TAACCGGCCAAGGAACAGTTTCAGGCGGGCAGTTTGACTG 6333 Query 140 GGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGGAA 199 |||||||||||||| ||| |||||||||||| ||||| | |||| ||| ||| Sbjct 6334 GGGCGGTCGCCTCCTAAAAGGTAACGGAGGCGTACAAAGGTTTTCTCAAGCTGGTCAGAA 6393 Query 200 ACCATGCGCACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAG 259 | || | ||| ||||||||||| | |||||||| | ||| |||||| ||||| Sbjct 6394 ATCAGTTTTAGAGTATAAAGGCAAAAGAAAGCTTGACTGCAAGACCTACAAGTCGAGCAG 6453 Query 260 GGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGA 319 |||||||||||| |||| ||||||| | || |||| ||||| ||| ||||||| ||||| Sbjct 6454 AGACGAAAGTCGGTCTTAGTGATCCGACAGTTCTGAGTGGAAAGGCTGTCGCTCAACGGA 6513 Query 320 TAAAAGCTACCCTGGGGATA 339 |||||| ||| || |||||| Sbjct 6514 TAAAAGTTACTCTAGGGATA 6533 >seq347 Length=42671 Score = 197 bits (218), Expect = 3e-48 Identities = 201/260 (77%), Gaps = 3/260 (1%) Strand=Plus/Minus Query 82 TTCTAACC--GGACGACGTATAACCGTTGACGGGACAGTGTCAGTCGGGCAGTTTGACTG 139 |||||||| | | | ||| |||||| | || ||||| |||| ||||||||||||||| Sbjct 32970 TTCTAACCTTGAAAGCCGT-TAACCGGCCAAGGAACAGTTTCAGGCGGGCAGTTTGACTG 32912 Query 140 GGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGGAA 199 |||||||||||||| ||| |||||||||||| ||||| | |||| ||| ||| Sbjct 32911 GGGCGGTCGCCTCCTAAAAGGTAACGGAGGCGTACAAAGGTTTTCTCAAGCTGGTCAGAA 32852 Query 200 ACCATGCGCACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAG 259 | || | ||| ||||||||||| | |||||||| | ||| |||||| ||||| Sbjct 32851 ATCAGTTTTAGAGTATAAAGGCAAAAGAAAGCTTGACTGCAAGACCTACAAGTCGAGCAG 32792 Query 260 GGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGA 319 |||||||||||| |||| ||||||| | || |||| ||||| ||| ||||||| ||||| Sbjct 32791 AGACGAAAGTCGGTCTTAGTGATCCGACAGTTCTGAGTGGAAAGGCTGTCGCTCAACGGA 32732 Query 320 TAAAAGCTACCCTGGGGATA 339 |||||| ||| || |||||| Sbjct 32731 TAAAAGTTACTCTAGGGATA 32712 >seq331 Length=49663 Score = 197 bits (218), Expect = 3e-48 Identities = 201/260 (77%), Gaps = 3/260 (1%) Strand=Plus/Minus Query 82 TTCTAACC--GGACGACGTATAACCGTTGACGGGACAGTGTCAGTCGGGCAGTTTGACTG 139 |||||||| | | | ||| |||||| | || ||||| |||| ||||||||||||||| Sbjct 14290 TTCTAACCTTGAAAGCCGT-TAACCGGCCAAGGAACAGTTTCAGGCGGGCAGTTTGACTG 14232 Query 140 GGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGGAA 199 |||||||||||||| ||| |||||||||||| ||||| | |||| ||| ||| Sbjct 14231 GGGCGGTCGCCTCCTAAAAGGTAACGGAGGCGTACAAAGGTTTTCTCAAGCTGGTCAGAA 14172 Query 200 ACCATGCGCACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAG 259 | || | ||| ||||||||||| | |||||||| | ||| |||||| ||||| Sbjct 14171 ATCAGTTTTAGAGTATAAAGGCAAAAGAAAGCTTGACTGCAAGACCTACAAGTCGAGCAG 14112 Query 260 GGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGA 319 |||||||||||| |||| ||||||| | || |||| ||||| ||| ||||||| ||||| Sbjct 14111 AGACGAAAGTCGGTCTTAGTGATCCGACAGTTCTGAGTGGAAAGGCTGTCGCTCAACGGA 14052 Query 320 TAAAAGCTACCCTGGGGATA 339 |||||| ||| || |||||| Sbjct 14051 TAAAAGTTACTCTAGGGATA 14032 Score = 197 bits (218), Expect = 3e-48 Identities = 201/260 (77%), Gaps = 3/260 (1%) Strand=Plus/Plus Query 82 TTCTAACC--GGACGACGTATAACCGTTGACGGGACAGTGTCAGTCGGGCAGTTTGACTG 139 |||||||| | | | ||| |||||| | || ||||| |||| ||||||||||||||| Sbjct 24873 TTCTAACCTTGAAAGCCGT-TAACCGGCCAAGGAACAGTTTCAGGCGGGCAGTTTGACTG 24931 Query 140 GGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGGAA 199 |||||||||||||| ||| |||||||||||| ||||| | |||| ||| ||| Sbjct 24932 GGGCGGTCGCCTCCTAAAAGGTAACGGAGGCGTACAAAGGTTTTCTCAAGCTGGTCAGAA 24991 Query 200 ACCATGCGCACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAG 259 | || | ||| ||||||||||| | |||||||| | ||| |||||| ||||| Sbjct 24992 ATCAGTTTTAGAGTATAAAGGCAAAAGAAAGCTTGACTGCAAGACCTACAAGTCGAGCAG 25051 Query 260 GGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGA 319 |||||||||||| |||| ||||||| | || |||| ||||| ||| ||||||| ||||| Sbjct 25052 AGACGAAAGTCGGTCTTAGTGATCCGACAGTTCTGAGTGGAAAGGCTGTCGCTCAACGGA 25111 Query 320 TAAAAGCTACCCTGGGGATA 339 |||||| ||| || |||||| Sbjct 25112 TAAAAGTTACTCTAGGGATA 25131 >seq262 Length=94814 Score = 197 bits (218), Expect = 3e-48 Identities = 201/260 (77%), Gaps = 3/260 (1%) Strand=Plus/Plus Query 82 TTCTAACC--GGACGACGTATAACCGTTGACGGGACAGTGTCAGTCGGGCAGTTTGACTG 139 |||||||| | | | ||| |||||| | || ||||| |||| ||||||||||||||| Sbjct 48554 TTCTAACCTTGAAAGCCGT-TAACCGGCCAAGGAACAGTTTCAGGCGGGCAGTTTGACTG 48612 Query 140 GGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGGAA 199 |||||||||||||| ||| |||||||||||| ||||| | |||| ||| ||| Sbjct 48613 GGGCGGTCGCCTCCTAAAAGGTAACGGAGGCGTACAAAGGTTTTCTCAAGCTGGTCAGAA 48672 Query 200 ACCATGCGCACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAG 259 | || | ||| ||||||||||| | |||||||| | ||| |||||| ||||| Sbjct 48673 ATCAGTTTTAGAGTATAAAGGCAAAAGAAAGCTTGACTGCAAGACCTACAAGTCGAGCAG 48732 Query 260 GGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGA 319 |||||||||||| |||| ||||||| | || |||| ||||| ||| ||||||| ||||| Sbjct 48733 AGACGAAAGTCGGTCTTAGTGATCCGACAGTTCTGAGTGGAAAGGCTGTCGCTCAACGGA 48792 Query 320 TAAAAGCTACCCTGGGGATA 339 |||||| ||| || |||||| Sbjct 48793 TAAAAGTTACTCTAGGGATA 48812 >seq249 Length=73938 Score = 197 bits (218), Expect = 3e-48 Identities = 201/260 (77%), Gaps = 3/260 (1%) Strand=Plus/Minus Query 82 TTCTAACC--GGACGACGTATAACCGTTGACGGGACAGTGTCAGTCGGGCAGTTTGACTG 139 |||||||| | | | ||| |||||| | || ||||| |||| ||||||||||||||| Sbjct 12755 TTCTAACCTTGAAAGCCGT-TAACCGGCCAAGGAACAGTTTCAGGCGGGCAGTTTGACTG 12697 Query 140 GGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGGAA 199 |||||||||||||| ||| |||||||||||| ||||| | |||| ||| ||| Sbjct 12696 GGGCGGTCGCCTCCTAAAAGGTAACGGAGGCGTACAAAGGTTTTCTCAAGCTGGTCAGAA 12637 Query 200 ACCATGCGCACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAG 259 | || | ||| ||||||||||| | |||||||| | ||| |||||| ||||| Sbjct 12636 ATCAGTTTTAGAGTATAAAGGCAAAAGAAAGCTTGACTGCAAGACCTACAAGTCGAGCAG 12577 Query 260 GGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGA 319 |||||||||||| |||| ||||||| | || |||| ||||| ||| ||||||| ||||| Sbjct 12576 AGACGAAAGTCGGTCTTAGTGATCCGACAGTTCTGAGTGGAAAGGCTGTCGCTCAACGGA 12517 Query 320 TAAAAGCTACCCTGGGGATA 339 |||||| ||| || |||||| Sbjct 12516 TAAAAGTTACTCTAGGGATA 12497 >seq239 Length=192504 Score = 197 bits (218), Expect = 3e-48 Identities = 201/260 (77%), Gaps = 3/260 (1%) Strand=Plus/Plus Query 82 TTCTAACC--GGACGACGTATAACCGTTGACGGGACAGTGTCAGTCGGGCAGTTTGACTG 139 |||||||| | | | ||| |||||| | || ||||| |||| ||||||||||||||| Sbjct 98424 TTCTAACCTTGAAAGCCGT-TAACCGGCCAAGGAACAGTTTCAGGCGGGCAGTTTGACTG 98482 Query 140 GGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGGAA 199 |||||||||||||| ||| |||||||||||| ||||| | |||| ||| ||| Sbjct 98483 GGGCGGTCGCCTCCTAAAAGGTAACGGAGGCGTACAAAGGTTTTCTCAAGCTGGTCAGAA 98542 Query 200 ACCATGCGCACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAG 259 | || | ||| ||||||||||| | |||||||| | ||| |||||| ||||| Sbjct 98543 ATCAGTTTTAGAGTATAAAGGCAAAAGAAAGCTTGACTGCAAGACCTACAAGTCGAGCAG 98602 Query 260 GGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGA 319 |||||||||||| |||| ||||||| | || |||| ||||| ||| ||||||| ||||| Sbjct 98603 AGACGAAAGTCGGTCTTAGTGATCCGACAGTTCTGAGTGGAAAGGCTGTCGCTCAACGGA 98662 Query 320 TAAAAGCTACCCTGGGGATA 339 |||||| ||| || |||||| Sbjct 98663 TAAAAGTTACTCTAGGGATA 98682 >seq280 Length=59840 Score = 172 bits (190), Expect = 1e-40 Identities = 174/225 (77%), Gaps = 1/225 (0%) Strand=Plus/Plus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||| || | | |||||||||||||||||||||||||||||||| |||||||||||| Sbjct 56821 GGGACATTGCCTGGTGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAACAGTAACGGAGGC 56880 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTG 230 || | ||| | |||||||| | |||||||| ||| |||| || |||| ||||| | Sbjct 56881 GCACGAAGGTTCCCTCAGCCCGATTGGAAACCGGGCGTCGAGTGTAATGGCACAAGGGAG 56940 Query 231 TTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGT 290 || ||||||| ||| | ||| ||||| | |||||| || | || ||||| || ||| Sbjct 56941 CTTTACTGCGAGACCGACGGGTCGAGCAGTG-CGAAAGCAGGTCATAGTGATCTGGTGGT 56999 Query 291 GCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGG 335 | | |||||| |||| || || ||||||||||| ||| | ||| Sbjct 57000 ACCGCATGGAAGGGCCATCACTTAACGGATAAAAGGTACTCCGGG 57044 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982388967648