Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kappaphycus_20alvarezii_20[genbank_20GCA_5F002205965.1_202017-06-23] 1,123 sequences; 349,495,466 total letters Query= AAMG01001138.1 Length=202 Score E Sequences producing significant alignments: (Bits) Value seq280 140 4e-31 seq360 107 2e-21 seq347 107 2e-21 seq331 107 2e-21 seq262 107 2e-21 seq249 107 2e-21 seq239 107 2e-21 seq354 77.0 4e-12 >seq280 Length=59840 Score = 140 bits (154), Expect = 4e-31 Identities = 119/151 (79%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 |||||||||| |||| ||||||| |||||||||| ||| ||| || |||| ||| Sbjct 56666 CGGGGTCTTTCCGTCTTGCTGCGGGTACCCGGCATCTTCGCCGGGACTTCAGTTTCGCTG 56607 Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 || || ||||||||||| ||| ||||||||||||| |||||||||||| Sbjct 56606 AGTTCGTGGTTGAGACAGTGGACCAGTCGTTACGCCATTCGTGCAGGACGGAACTTACCC 56547 Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTA 173 | ||||||||||||||||||||||||||||| Sbjct 56546 GCCAAGGAATTTCGCTACCTTAGGACCGTTA 56516 >seq360 Length=28839 Score = 107 bits (118), Expect = 2e-21 Identities = 113/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| | |||| || |||||||||| || | | | ||||| | ||| Sbjct 6146 GGGTCTTTCTGTCCAGGTGTAGGTAGTCCGCATCTTCACAGACAATTCTATTTCGCCGAG 6087 Query 85 CTCACGGT-TGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 || | | |||||||| ||| || ||||||| |||||||||||||||| Sbjct 6086 -TCTCTCTCTGAGACAGTACCCAAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCG 6028 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||||||| Sbjct 6027 ACAAGGAATTTCGCTACCTTAGGACCGTTA 5998 >seq347 Length=42671 Score = 107 bits (118), Expect = 2e-21 Identities = 113/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| | |||| || |||||||||| || | | | ||||| | ||| Sbjct 33099 GGGTCTTTCTGTCCAGGTGTAGGTAGTCCGCATCTTCACAGACAATTCTATTTCGCCGAG 33158 Query 85 CTCACGGT-TGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 || | | |||||||| ||| || ||||||| |||||||||||||||| Sbjct 33159 -TCTCTCTCTGAGACAGTACCCAAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCG 33217 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||||||| Sbjct 33218 ACAAGGAATTTCGCTACCTTAGGACCGTTA 33247 >seq331 Length=49663 Score = 107 bits (118), Expect = 2e-21 Identities = 113/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| | |||| || |||||||||| || | | | ||||| | ||| Sbjct 14419 GGGTCTTTCTGTCCAGGTGTAGGTAGTCCGCATCTTCACAGACAATTCTATTTCGCCGAG 14478 Query 85 CTCACGGT-TGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 || | | |||||||| ||| || ||||||| |||||||||||||||| Sbjct 14479 -TCTCTCTCTGAGACAGTACCCAAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCG 14537 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||||||| Sbjct 14538 ACAAGGAATTTCGCTACCTTAGGACCGTTA 14567 Score = 107 bits (118), Expect = 2e-21 Identities = 113/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| | |||| || |||||||||| || | | | ||||| | ||| Sbjct 24744 GGGTCTTTCTGTCCAGGTGTAGGTAGTCCGCATCTTCACAGACAATTCTATTTCGCCGAG 24685 Query 85 CTCACGGT-TGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 || | | |||||||| ||| || ||||||| |||||||||||||||| Sbjct 24684 -TCTCTCTCTGAGACAGTACCCAAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCG 24626 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||||||| Sbjct 24625 ACAAGGAATTTCGCTACCTTAGGACCGTTA 24596 >seq262 Length=94814 Score = 107 bits (118), Expect = 2e-21 Identities = 101/130 (78%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 45 GGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAGCTCACGGT-TGAGACAGNNN 103 ||||| || |||||||||| || | | | ||||| | ||| || | | |||||||| Sbjct 48413 GGGTAGTCCGCATCTTCACAGACAATTCTATTTCGCCGAG-TCTCTCTCTGAGACAGTAC 48355 Query 104 NNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTT 163 ||| || ||||||| |||||||||||||||||||||||||||||||||||| Sbjct 48354 CCAAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTT 48295 Query 164 AGGACCGTTA 173 |||||||||| Sbjct 48294 AGGACCGTTA 48285 >seq249 Length=73938 Score = 107 bits (118), Expect = 2e-21 Identities = 113/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| | |||| || |||||||||| || | | | ||||| | ||| Sbjct 12884 GGGTCTTTCTGTCCAGGTGTAGGTAGTCCGCATCTTCACAGACAATTCTATTTCGCCGAG 12943 Query 85 CTCACGGT-TGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 || | | |||||||| ||| || ||||||| |||||||||||||||| Sbjct 12944 -TCTCTCTCTGAGACAGTACCCAAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCG 13002 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||||||| Sbjct 13003 ACAAGGAATTTCGCTACCTTAGGACCGTTA 13032 >seq239 Length=192504 Score = 107 bits (118), Expect = 2e-21 Identities = 113/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| | |||| || |||||||||| || | | | ||||| | ||| Sbjct 98295 GGGTCTTTCTGTCCAGGTGTAGGTAGTCCGCATCTTCACAGACAATTCTATTTCGCCGAG 98236 Query 85 CTCACGGT-TGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 || | | |||||||| ||| || ||||||| |||||||||||||||| Sbjct 98235 -TCTCTCTCTGAGACAGTACCCAAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCG 98177 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||||||| Sbjct 98176 ACAAGGAATTTCGCTACCTTAGGACCGTTA 98147 >seq354 Length=42089 Score = 77.0 bits (84), Expect = 4e-12 Identities = 103/146 (71%), Gaps = 6/146 (4%) Strand=Plus/Plus Query 25 GGGTCTTTTCGTCCCATCGCGG---GTAATCGGCATCTTCACCGATACTACAATTTCACT 81 |||||||| |||| | || | |||| | |||| ||||| | || | |||||| || Sbjct 11096 GGGTCTTTCCGTC---TTGCTGTAAGTAACCTGCATTTTCACAGGTATTGTAATTTCGCT 11152 Query 82 GAGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACC 141 || | | ||||||||| ||| |||||| |||||| ||||| ||||| Sbjct 11153 GAATTTATATTTGAGACAGTAAAGCAATCGTTACGCCATTCATGCAGGACGGAATTTACC 11212 Query 142 CGACAAGGAATTTCGCTACCTTAGGA 167 || |||||| ||||||||||| |||| Sbjct 11213 CGTCAAGGAGTTTCGCTACCTGAGGA 11238 Score = 77.0 bits (84), Expect = 4e-12 Identities = 103/146 (71%), Gaps = 6/146 (4%) Strand=Plus/Plus Query 25 GGGTCTTTTCGTCCCATCGCGG---GTAATCGGCATCTTCACCGATACTACAATTTCACT 81 |||||||| |||| | || | |||| | |||| ||||| | || | |||||| || Sbjct 36347 GGGTCTTTCCGTC---TTGCTGTAAGTAACCTGCATTTTCACAGGTATTGTAATTTCGCT 36403 Query 82 GAGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACC 141 || | | ||||||||| ||| |||||| |||||| ||||| ||||| Sbjct 36404 GAATTTATATTTGAGACAGTAAAGCAATCGTTACGCCATTCATGCAGGACGGAATTTACC 36463 Query 142 CGACAAGGAATTTCGCTACCTTAGGA 167 || |||||| ||||||||||| |||| Sbjct 36464 CGTCAAGGAGTTTCGCTACCTGAGGA 36489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547194046977