Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kappaphycus_20alvarezii_20[genbank_20GCA_5F002205965.1_202017-06-23] 1,123 sequences; 349,495,466 total letters Query= AAMG01001821.1 Length=161 Score E Sequences producing significant alignments: (Bits) Value seq280 168 6e-40 seq1105 116 3e-24 seq381 116 3e-24 seq360 116 3e-24 seq347 116 3e-24 seq331 116 3e-24 seq268 116 3e-24 seq262 116 3e-24 seq249 116 3e-24 seq239 116 3e-24 >seq280 Length=59840 Score = 168 bits (186), Expect = 6e-40 Identities = 136/162 (84%), Gaps = 2/162 (1%) Strand=Plus/Minus Query 1 TCGAGTTGCAGACTACAATCCGGACT-ACGATACACTTTCTGGGATTAGCTCCCCCTCGC 59 |||||||||||||| ||||||| ||| | | || |||| | |||| |||||||||||| Sbjct 38225 TCGAGTTGCAGACTCCAATCCGAACTGAGGCGACT-TTTCGGCGATTGGCTCCCCCTCGC 38167 Query 60 GGGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCC 119 |||| || || ||||||| |||||||| ||||||| ||||| | |||||||||| Sbjct 38166 AGGTTCGCAGCGCTCTGTAGTCGCCATTGTAGTACGTGTGTAGCCCCAGTCATAAGGGCC 38107 Query 120 ATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 |||||||||||||||||||||||||||||||||||||| ||| Sbjct 38106 ATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGACAC 38065 Score = 168 bits (186), Expect = 6e-40 Identities = 136/162 (84%), Gaps = 2/162 (1%) Strand=Plus/Minus Query 1 TCGAGTTGCAGACTACAATCCGGACT-ACGATACACTTTCTGGGATTAGCTCCCCCTCGC 59 |||||||||||||| ||||||| ||| | | || |||| | |||| |||||||||||| Sbjct 46512 TCGAGTTGCAGACTCCAATCCGAACTGAGGCGACT-TTTCGGCGATTGGCTCCCCCTCGC 46454 Query 60 GGGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCC 119 |||| || || ||||||| |||||||| ||||||| ||||| | |||||||||| Sbjct 46453 AGGTTCGCAGCGCTCTGTAGTCGCCATTGTAGTACGTGTGTAGCCCCAGTCATAAGGGCC 46394 Query 120 ATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 |||||||||||||||||||||||||||||||||||||| ||| Sbjct 46393 ATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGACAC 46352 >seq1105 Length=37519 Score = 116 bits (128), Expect = 3e-24 Identities = 124/161 (77%), Gaps = 2/161 (1%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACT-ACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 |||||| ||| |||||||||| ||| | ||| ||| || |||||||| | ||| || Sbjct 35098 CGAGTTTCAGCCTACAATCCGAACTGAGGATGTG-TTTATGAGATTAGCTTGCTCTCACG 35040 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 ||| || | || ||| ||||||||| ||||||| ||||| |||||||| || Sbjct 35039 AGTTAGCAACTCTTTGTCACAACCATTGTAGCACGTGTGTAGCCCAGGACATAAGGGGCA 34980 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||||||| |||||||||||||||||||| Sbjct 34979 TGCTGACTTGACGTCATCCTTACCTTCCTCCGGTTTGTCAC 34939 >seq381 Length=26942 Score = 116 bits (128), Expect = 3e-24 Identities = 124/161 (77%), Gaps = 2/161 (1%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACT-ACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 |||||| ||| |||||||||| ||| | ||| ||| || |||||||| | ||| || Sbjct 1325 CGAGTTTCAGCCTACAATCCGAACTGAGGATGTG-TTTATGAGATTAGCTTGCTCTCACG 1383 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 ||| || | || ||| ||||||||| ||||||| ||||| |||||||| || Sbjct 1384 AGTTAGCAACTCTTTGTCACAACCATTGTAGCACGTGTGTAGCCCAGGACATAAGGGGCA 1443 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||||||| |||||||||||||||||||| Sbjct 1444 TGCTGACTTGACGTCATCCTTACCTTCCTCCGGTTTGTCAC 1484 >seq360 Length=28839 Score = 116 bits (128), Expect = 3e-24 Identities = 124/161 (77%), Gaps = 2/161 (1%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACT-ACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 |||||| ||| |||||||||| ||| | ||| ||| || |||||||| | ||| || Sbjct 3613 CGAGTTTCAGCCTACAATCCGAACTGAGGATGTG-TTTATGAGATTAGCTTGCTCTCACG 3555 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 ||| || | || ||| ||||||||| ||||||| ||||| |||||||| || Sbjct 3554 AGTTAGCAACTCTTTGTCACAACCATTGTAGCACGTGTGTAGCCCAGGACATAAGGGGCA 3495 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||||||| |||||||||||||||||||| Sbjct 3494 TGCTGACTTGACGTCATCCTTACCTTCCTCCGGTTTGTCAC 3454 >seq347 Length=42671 Score = 116 bits (128), Expect = 3e-24 Identities = 124/161 (77%), Gaps = 2/161 (1%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACT-ACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 |||||| ||| |||||||||| ||| | ||| ||| || |||||||| | ||| || Sbjct 35632 CGAGTTTCAGCCTACAATCCGAACTGAGGATGTG-TTTATGAGATTAGCTTGCTCTCACG 35690 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 ||| || | || ||| ||||||||| ||||||| ||||| |||||||| || Sbjct 35691 AGTTAGCAACTCTTTGTCACAACCATTGTAGCACGTGTGTAGCCCAGGACATAAGGGGCA 35750 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||||||| |||||||||||||||||||| Sbjct 35751 TGCTGACTTGACGTCATCCTTACCTTCCTCCGGTTTGTCAC 35791 >seq331 Length=49663 Score = 116 bits (128), Expect = 3e-24 Identities = 124/161 (77%), Gaps = 2/161 (1%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACT-ACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 |||||| ||| |||||||||| ||| | ||| ||| || |||||||| | ||| || Sbjct 16952 CGAGTTTCAGCCTACAATCCGAACTGAGGATGTG-TTTATGAGATTAGCTTGCTCTCACG 17010 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 ||| || | || ||| ||||||||| ||||||| ||||| |||||||| || Sbjct 17011 AGTTAGCAACTCTTTGTCACAACCATTGTAGCACGTGTGTAGCCCAGGACATAAGGGGCA 17070 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||||||| |||||||||||||||||||| Sbjct 17071 TGCTGACTTGACGTCATCCTTACCTTCCTCCGGTTTGTCAC 17111 Score = 116 bits (128), Expect = 3e-24 Identities = 124/161 (77%), Gaps = 2/161 (1%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACT-ACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 |||||| ||| |||||||||| ||| | ||| ||| || |||||||| | ||| || Sbjct 22211 CGAGTTTCAGCCTACAATCCGAACTGAGGATGTG-TTTATGAGATTAGCTTGCTCTCACG 22153 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 ||| || | || ||| ||||||||| ||||||| ||||| |||||||| || Sbjct 22152 AGTTAGCAACTCTTTGTCACAACCATTGTAGCACGTGTGTAGCCCAGGACATAAGGGGCA 22093 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||||||| |||||||||||||||||||| Sbjct 22092 TGCTGACTTGACGTCATCCTTACCTTCCTCCGGTTTGTCAC 22052 >seq268 Length=42779 Score = 116 bits (128), Expect = 3e-24 Identities = 124/161 (77%), Gaps = 2/161 (1%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACT-ACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 |||||| ||| |||||||||| ||| | ||| ||| || |||||||| | ||| || Sbjct 41920 CGAGTTTCAGCCTACAATCCGAACTGAGGATGTG-TTTATGAGATTAGCTTGCTCTCACG 41862 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 ||| || | || ||| ||||||||| ||||||| ||||| |||||||| || Sbjct 41861 AGTTAGCAACTCTTTGTCACAACCATTGTAGCACGTGTGTAGCCCAGGACATAAGGGGCA 41802 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||||||| |||||||||||||||||||| Sbjct 41801 TGCTGACTTGACGTCATCCTTACCTTCCTCCGGTTTGTCAC 41761 >seq262 Length=94814 Score = 116 bits (128), Expect = 3e-24 Identities = 124/161 (77%), Gaps = 2/161 (1%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACT-ACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 |||||| ||| |||||||||| ||| | ||| ||| || |||||||| | ||| || Sbjct 45900 CGAGTTTCAGCCTACAATCCGAACTGAGGATGTG-TTTATGAGATTAGCTTGCTCTCACG 45842 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 ||| || | || ||| ||||||||| ||||||| ||||| |||||||| || Sbjct 45841 AGTTAGCAACTCTTTGTCACAACCATTGTAGCACGTGTGTAGCCCAGGACATAAGGGGCA 45782 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||||||| |||||||||||||||||||| Sbjct 45781 TGCTGACTTGACGTCATCCTTACCTTCCTCCGGTTTGTCAC 45741 >seq249 Length=73938 Score = 116 bits (128), Expect = 3e-24 Identities = 124/161 (77%), Gaps = 2/161 (1%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACT-ACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 |||||| ||| |||||||||| ||| | ||| ||| || |||||||| | ||| || Sbjct 15417 CGAGTTTCAGCCTACAATCCGAACTGAGGATGTG-TTTATGAGATTAGCTTGCTCTCACG 15475 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 ||| || | || ||| ||||||||| ||||||| ||||| |||||||| || Sbjct 15476 AGTTAGCAACTCTTTGTCACAACCATTGTAGCACGTGTGTAGCCCAGGACATAAGGGGCA 15535 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||||||| |||||||||||||||||||| Sbjct 15536 TGCTGACTTGACGTCATCCTTACCTTCCTCCGGTTTGTCAC 15576 >seq239 Length=192504 Score = 116 bits (128), Expect = 3e-24 Identities = 124/161 (77%), Gaps = 2/161 (1%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACT-ACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 |||||| ||| |||||||||| ||| | ||| ||| || |||||||| | ||| || Sbjct 95762 CGAGTTTCAGCCTACAATCCGAACTGAGGATGTG-TTTATGAGATTAGCTTGCTCTCACG 95704 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 ||| || | || ||| ||||||||| ||||||| ||||| |||||||| || Sbjct 95703 AGTTAGCAACTCTTTGTCACAACCATTGTAGCACGTGTGTAGCCCAGGACATAAGGGGCA 95644 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||||||| |||||||||||||||||||| Sbjct 95643 TGCTGACTTGACGTCATCCTTACCTTCCTCCGGTTTGTCAC 95603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415995474310