Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kappaphycus_20alvarezii_20[genbank_20GCA_5F002205965.1_202017-06-23] 1,123 sequences; 349,495,466 total letters Query= AAMG01001851.1 Length=140 Score E Sequences producing significant alignments: (Bits) Value seq280 114 9e-24 seq360 95.1 9e-18 seq347 95.1 9e-18 seq331 95.1 9e-18 seq262 95.1 9e-18 seq249 95.1 9e-18 seq239 95.1 9e-18 >seq280 Length=59840 Score = 114 bits (126), Expect = 9e-24 Identities = 97/118 (82%), Gaps = 1/118 (1%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 ||||||||||||||| || |||||||||||||| | ||||| ||||||||||||||| Sbjct 57037 TACCTTTTATCCGTTAAGTGATGGCCCTTCCATGCGGTACCACCAGATCACTATGACCTG 56978 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118 |||||||| |||||| | || | ||||||| | |||| | ||| ||||||| |||| Sbjct 56977 CTTTCGCA-CTGCTCGACCCGTCGGTCTCGCAGTAAAGCTCCCTTGTGCCATTACACT 56921 >seq360 Length=28839 Score = 95.1 bits (104), Expect = 9e-18 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 || |||||||||||||||||| ||| ||||| ||| | | |||||||||| |||| Sbjct 6522 TAACTTTTATCCGTTGAGCGACAGCCTTTCCACTCAGAACTGTCGGATCACTAAGACCGA 6463 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120 |||||| ||||||| | |||| | ||| ||| |||||| |||||||| || ||| | Sbjct 6462 CTTTCGTCTCTGCTCGACTTGTAGGTCTTGCAGTCAAGCTTTCTTTTGCCTTTATACTCT 6403 Query 121 CACTACGATTTCCGACC 137 | |||||| |||| Sbjct 6402 AAAACTGATTTCTGACC 6386 >seq347 Length=42671 Score = 95.1 bits (104), Expect = 9e-18 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 || |||||||||||||||||| ||| ||||| ||| | | |||||||||| |||| Sbjct 32723 TAACTTTTATCCGTTGAGCGACAGCCTTTCCACTCAGAACTGTCGGATCACTAAGACCGA 32782 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120 |||||| ||||||| | |||| | ||| ||| |||||| |||||||| || ||| | Sbjct 32783 CTTTCGTCTCTGCTCGACTTGTAGGTCTTGCAGTCAAGCTTTCTTTTGCCTTTATACTCT 32842 Query 121 CACTACGATTTCCGACC 137 | |||||| |||| Sbjct 32843 AAAACTGATTTCTGACC 32859 >seq331 Length=49663 Score = 95.1 bits (104), Expect = 9e-18 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 || |||||||||||||||||| ||| ||||| ||| | | |||||||||| |||| Sbjct 14043 TAACTTTTATCCGTTGAGCGACAGCCTTTCCACTCAGAACTGTCGGATCACTAAGACCGA 14102 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120 |||||| ||||||| | |||| | ||| ||| |||||| |||||||| || ||| | Sbjct 14103 CTTTCGTCTCTGCTCGACTTGTAGGTCTTGCAGTCAAGCTTTCTTTTGCCTTTATACTCT 14162 Query 121 CACTACGATTTCCGACC 137 | |||||| |||| Sbjct 14163 AAAACTGATTTCTGACC 14179 Score = 95.1 bits (104), Expect = 9e-18 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 || |||||||||||||||||| ||| ||||| ||| | | |||||||||| |||| Sbjct 25120 TAACTTTTATCCGTTGAGCGACAGCCTTTCCACTCAGAACTGTCGGATCACTAAGACCGA 25061 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120 |||||| ||||||| | |||| | ||| ||| |||||| |||||||| || ||| | Sbjct 25060 CTTTCGTCTCTGCTCGACTTGTAGGTCTTGCAGTCAAGCTTTCTTTTGCCTTTATACTCT 25001 Query 121 CACTACGATTTCCGACC 137 | |||||| |||| Sbjct 25000 AAAACTGATTTCTGACC 24984 >seq262 Length=94814 Score = 95.1 bits (104), Expect = 9e-18 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 || |||||||||||||||||| ||| ||||| ||| | | |||||||||| |||| Sbjct 48801 TAACTTTTATCCGTTGAGCGACAGCCTTTCCACTCAGAACTGTCGGATCACTAAGACCGA 48742 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120 |||||| ||||||| | |||| | ||| ||| |||||| |||||||| || ||| | Sbjct 48741 CTTTCGTCTCTGCTCGACTTGTAGGTCTTGCAGTCAAGCTTTCTTTTGCCTTTATACTCT 48682 Query 121 CACTACGATTTCCGACC 137 | |||||| |||| Sbjct 48681 AAAACTGATTTCTGACC 48665 >seq249 Length=73938 Score = 95.1 bits (104), Expect = 9e-18 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 || |||||||||||||||||| ||| ||||| ||| | | |||||||||| |||| Sbjct 12508 TAACTTTTATCCGTTGAGCGACAGCCTTTCCACTCAGAACTGTCGGATCACTAAGACCGA 12567 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120 |||||| ||||||| | |||| | ||| ||| |||||| |||||||| || ||| | Sbjct 12568 CTTTCGTCTCTGCTCGACTTGTAGGTCTTGCAGTCAAGCTTTCTTTTGCCTTTATACTCT 12627 Query 121 CACTACGATTTCCGACC 137 | |||||| |||| Sbjct 12628 AAAACTGATTTCTGACC 12644 >seq239 Length=192504 Score = 95.1 bits (104), Expect = 9e-18 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 || |||||||||||||||||| ||| ||||| ||| | | |||||||||| |||| Sbjct 98671 TAACTTTTATCCGTTGAGCGACAGCCTTTCCACTCAGAACTGTCGGATCACTAAGACCGA 98612 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120 |||||| ||||||| | |||| | ||| ||| |||||| |||||||| || ||| | Sbjct 98611 CTTTCGTCTCTGCTCGACTTGTAGGTCTTGCAGTCAAGCTTTCTTTTGCCTTTATACTCT 98552 Query 121 CACTACGATTTCCGACC 137 | |||||| |||| Sbjct 98551 AAAACTGATTTCTGACC 98535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 351996294100