Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kappaphycus_20alvarezii_20[genbank_20GCA_5F002205965.1_202017-06-23] 1,123 sequences; 349,495,466 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq1108 143 3e-32 seq866 143 3e-32 seq396 143 3e-32 seq253 143 3e-32 seq219 143 3e-32 seq182 143 3e-32 seq390 134 1e-29 seq387 134 1e-29 seq763 125 7e-27 seq414 105 7e-21 seq494 96.9 4e-18 seq787 78.8 1e-12 seq955 77.0 3e-12 >seq1108 Length=20975 Score = 143 bits (158), Expect = 3e-32 Identities = 141/177 (80%), Gaps = 5/177 (3%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCATGG 71 |||||| ||| |||||||||| ||||||||| ||| ||||| |||||||||| ||||| Sbjct 17702 TTTACTGTGAGAAAATTAGAGTGTTCAAAGCGGGCGTTTGCCATGAATACATTAGCATGG 17643 Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCT-AGGACCGCCCGTAATGAT 130 |||||||||||||||| || | ||||||||| ||||| | |||| || |||||||| Sbjct 17642 AATAATAGAATAGGACCTG-TTTCCTATTTTGTTGGTTTGTGAGGAACG--GGTAATGAT 17586 Query 131 AAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATT 187 || | ||| || ||||| | |||||| |||| |||||||||||||||||| Sbjct 17585 TAAGAGGGACGGTTGGGGGCATTTGTATTCCGGCGTCAGAGGTGAAATTCTTGGATT 17529 >seq866 Length=905157 Score = 143 bits (158), Expect = 3e-32 Identities = 141/177 (80%), Gaps = 5/177 (3%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCATGG 71 |||||| ||| |||||||||| ||||||||| ||| ||||| |||||||||| ||||| Sbjct 788792 TTTACTGTGAGAAAATTAGAGTGTTCAAAGCGGGCGTTTGCCATGAATACATTAGCATGG 788851 Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCT-AGGACCGCCCGTAATGAT 130 |||||||||||||||| || | ||||||||| ||||| | |||| || |||||||| Sbjct 788852 AATAATAGAATAGGACCTG-TTTCCTATTTTGTTGGTTTGTGAGGAACG--GGTAATGAT 788908 Query 131 AAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATT 187 || | ||| || ||||| | |||||| |||| |||||||||||||||||| Sbjct 788909 TAAGAGGGACGGTTGGGGGCATTTGTATTCCGGCGTCAGAGGTGAAATTCTTGGATT 788965 >seq396 Length=32609 Score = 143 bits (158), Expect = 3e-32 Identities = 141/177 (80%), Gaps = 5/177 (3%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCATGG 71 |||||| ||| |||||||||| ||||||||| ||| ||||| |||||||||| ||||| Sbjct 14036 TTTACTGTGAGAAAATTAGAGTGTTCAAAGCGGGCGTTTGCCATGAATACATTAGCATGG 13977 Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCT-AGGACCGCCCGTAATGAT 130 |||||||||||||||| || | ||||||||| ||||| | |||| || |||||||| Sbjct 13976 AATAATAGAATAGGACCTG-TTTCCTATTTTGTTGGTTTGTGAGGAACG--GGTAATGAT 13920 Query 131 AAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATT 187 || | ||| || ||||| | |||||| |||| |||||||||||||||||| Sbjct 13919 TAAGAGGGACGGTTGGGGGCATTTGTATTCCGGCGTCAGAGGTGAAATTCTTGGATT 13863 Score = 143 bits (158), Expect = 3e-32 Identities = 141/177 (80%), Gaps = 5/177 (3%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCATGG 71 |||||| ||| |||||||||| ||||||||| ||| ||||| |||||||||| ||||| Sbjct 28422 TTTACTGTGAGAAAATTAGAGTGTTCAAAGCGGGCGTTTGCCATGAATACATTAGCATGG 28363 Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCT-AGGACCGCCCGTAATGAT 130 |||||||||||||||| || | ||||||||| ||||| | |||| || |||||||| Sbjct 28362 AATAATAGAATAGGACCTG-TTTCCTATTTTGTTGGTTTGTGAGGAACG--GGTAATGAT 28306 Query 131 AAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATT 187 || | ||| || ||||| | |||||| |||| |||||||||||||||||| Sbjct 28305 TAAGAGGGACGGTTGGGGGCATTTGTATTCCGGCGTCAGAGGTGAAATTCTTGGATT 28249 >seq253 Length=48319 Score = 143 bits (158), Expect = 3e-32 Identities = 141/177 (80%), Gaps = 5/177 (3%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCATGG 71 |||||| ||| |||||||||| ||||||||| ||| ||||| |||||||||| ||||| Sbjct 10518 TTTACTGTGAGAAAATTAGAGTGTTCAAAGCGGGCGTTTGCCATGAATACATTAGCATGG 10459 Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCT-AGGACCGCCCGTAATGAT 130 |||||||||||||||| || | ||||||||| ||||| | |||| || |||||||| Sbjct 10458 AATAATAGAATAGGACCTG-TTTCCTATTTTGTTGGTTTGTGAGGAACG--GGTAATGAT 10402 Query 131 AAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATT 187 || | ||| || ||||| | |||||| |||| |||||||||||||||||| Sbjct 10401 TAAGAGGGACGGTTGGGGGCATTTGTATTCCGGCGTCAGAGGTGAAATTCTTGGATT 10345 Score = 143 bits (158), Expect = 3e-32 Identities = 141/177 (80%), Gaps = 5/177 (3%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCATGG 71 |||||| ||| |||||||||| ||||||||| ||| ||||| |||||||||| ||||| Sbjct 28856 TTTACTGTGAGAAAATTAGAGTGTTCAAAGCGGGCGTTTGCCATGAATACATTAGCATGG 28797 Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCT-AGGACCGCCCGTAATGAT 130 |||||||||||||||| || | ||||||||| ||||| | |||| || |||||||| Sbjct 28796 AATAATAGAATAGGACCTG-TTTCCTATTTTGTTGGTTTGTGAGGAACG--GGTAATGAT 28740 Query 131 AAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATT 187 || | ||| || ||||| | |||||| |||| |||||||||||||||||| Sbjct 28739 TAAGAGGGACGGTTGGGGGCATTTGTATTCCGGCGTCAGAGGTGAAATTCTTGGATT 28683 Score = 136 bits (150), Expect = 4e-30 Identities = 140/177 (79%), Gaps = 6/177 (3%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCATGG 71 |||||| ||| |||||||||| ||||||||| ||| ||||| |||||||||| ||||| Sbjct 46383 TTTACTGTGAGAAAATTAGAGTGTTCAAAGCGGGCGTTTGCCATGAATACATTAGCATGG 46324 Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCT-AGGACCGCCCGTAATGAT 130 |||||||||||||||| || | ||||||||| ||||| | |||| || |||||||| Sbjct 46323 AATAATAGAATAGGACCTG-TTTCCTATTTTGTTGGTTTGTGAGGAACG--GGTAATGAT 46267 Query 131 AAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATT 187 || | ||| || |||| | |||||| |||| |||||||||||||||||| Sbjct 46266 TAAGAGGGACGGT-TGGGGCATTTGTATTCCGGCGTCAGAGGTGAAATTCTTGGATT 46211 >seq219 Length=546749 Score = 143 bits (158), Expect = 3e-32 Identities = 141/177 (80%), Gaps = 5/177 (3%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCATGG 71 |||||| ||| |||||||||| ||||||||| ||| ||||| |||||||||| ||||| Sbjct 404517 TTTACTGTGAGAAAATTAGAGTGTTCAAAGCGGGCATTTGCCATGAATACATTAGCATGG 404576 Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCT-AGGACCGCCCGTAATGAT 130 |||||||||||||||| || | ||||||||| ||||| | |||| || |||||||| Sbjct 404577 AATAATAGAATAGGACCTG-TTTCCTATTTTGTTGGTTTGTGAGGAACG--GGTAATGAT 404633 Query 131 AAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATT 187 || | ||| || ||||| | |||||| |||| |||||||||||||||||| Sbjct 404634 TAAGAGGGACGGTTGGGGGCATTTGTATTCCGGCGTCAGAGGTGAAATTCTTGGATT 404690 >seq182 Length=1481751 Score = 143 bits (158), Expect = 3e-32 Identities = 141/177 (80%), Gaps = 5/177 (3%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCATGG 71 |||||| ||| |||||||||| ||||||||| ||| ||||| |||||||||| ||||| Sbjct 12963 TTTACTGTGAGAAAATTAGAGTGTTCAAAGCGGGCGTTTGCCATGAATACATTAGCATGG 12904 Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCT-AGGACCGCCCGTAATGAT 130 |||||||||||||||| || | ||||||||| ||||| | |||| || |||||||| Sbjct 12903 AATAATAGAATAGGACCTG-TTTCCTATTTTGTTGGTTTGTGAGGAACG--GGTAATGAT 12847 Query 131 AAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATT 187 || | ||| || ||||| | |||||| |||| |||||||||||||||||| Sbjct 12846 TAAGAGGGACGGTTGGGGGCATTTGTATTCCGGCGTCAGAGGTGAAATTCTTGGATT 12790 >seq390 Length=27140 Score = 134 bits (148), Expect = 1e-29 Identities = 139/177 (79%), Gaps = 5/177 (3%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCATGG 71 |||||| ||| || ||||||| ||||||||| ||| ||||| |||||||||| ||||| Sbjct 20051 TTTACTGTGAGAACATTAGAGTGTTCAAAGCGGGCGTTTGCCATGAATACATTAGCATGG 19992 Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCT-AGGACCGCCCGTAATGAT 130 |||||||||||||||| || | ||||||||| ||||| | |||| || |||||||| Sbjct 19991 AATAATAGAATAGGACCTG-TTTCCTATTTTGTTGGTTTGTGAGGAACG--GGTAATGAT 19935 Query 131 AAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATT 187 || | ||| || ||||| | |||||| |||| ||||||||||| |||||| Sbjct 19934 TAAGAGGGACGGTTGGGGGCATTTGTATTCCGGCGTCAGAGGTGAAATTCATGGATT 19878 >seq387 Length=4017768 Score = 134 bits (148), Expect = 1e-29 Identities = 139/177 (79%), Gaps = 5/177 (3%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCATGG 71 |||||| ||| || ||||||| ||||||||| ||| ||||| |||||||||| ||||| Sbjct 3306 TTTACTGTGAGAACATTAGAGTGTTCAAAGCGGGCGTTTGCCATGAATACATTAGCATGG 3247 Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCT-AGGACCGCCCGTAATGAT 130 |||||||||||||||| || | ||||||||| ||||| | |||| || |||||||| Sbjct 3246 AATAATAGAATAGGACCTG-TTTCCTATTTTGTTGGTTTGTGAGGAACG--GGTAATGAT 3190 Query 131 AAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATT 187 || | ||| || ||||| | |||||| |||| ||||||||||| |||||| Sbjct 3189 TAAGAGGGACGGTTGGGGGCATTTGTATTCCGGCGTCAGAGGTGAAATTCATGGATT 3133 >seq763 Length=1302795 Score = 125 bits (138), Expect = 7e-27 Identities = 137/177 (77%), Gaps = 5/177 (3%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCATGG 71 |||||| ||| ||||||||| ||||||||| ||| ||||| |||||||||| ||||| Sbjct 729821 TTTACTGTGAGCAAATTAGAGTGTTCAAAGCGGGCGTTTGCCATGAATACATTAGCATGG 729762 Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCT-AGGACCGCCCGTAATGAT 130 |||||||||||||||| || | ||||||||| ||||| | |||| | |||||||| Sbjct 729761 AATAATAGAATAGGACCTG-TTTCCTATTTTGTTGGTTTGTGAGGAAAG--GGTAATGAT 729705 Query 131 AAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATT 187 || | ||| || | ||| | |||||| |||| ||||| |||||||||||| Sbjct 729704 TAAGAGGGACGGTTGCGGGCATTTGTATTCCGGCGTCATAGGTGCAATTCTTGGATT 729648 >seq414 Length=1073906 Score = 105 bits (116), Expect = 7e-21 Identities = 135/180 (75%), Gaps = 7/180 (4%) Strand=Plus/Minus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 |||||| ||||| || ||||||| ||||||||| ||| ||||| |||| ||||| ||| Sbjct 191980 CTTTTAATTTGAGAATATTAGAGTGTTCAAAGCGGGCTTTTGCCATGAATGCATTAGCAT 191921 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTT-GTAGGTTTCT-AGGACCGCCCGTAAT 127 || |||||| || ||||| || ||| |||| || ||||| | | || || ||||| Sbjct 191920 GGGATAATAAAACAGGACTTGT--TTCCCTTTTCGTTGGTTTGTGAAGAACGG--GTAAT 191865 Query 128 GATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATT 187 ||| || | ||| || ||||| | |||||| |||| ||| |||||||||||||| Sbjct 191864 GATTAAGAAGGACGGTTGGGGGCATTTGTATTCCGGCGTCAGAGGAGAAATTCTTGGATT 191805 >seq494 Length=72403 Score = 96.9 bits (106), Expect = 4e-18 Identities = 116/150 (77%), Gaps = 7/150 (5%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCATGG 71 |||||| ||| |||||||||| |||||| || ||| ||||| |||||||||| |||| Sbjct 89 TTTACTGTGAGAAAATTAGAGTGTTCAA-GCGGGCGTTTGCCATGAATACATTAGCATG- 146 Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCT-AGGACCGCCCGTAATGAT 130 |||||||||||||||| || | ||||||||| ||||| | |||| | |||||||| Sbjct 147 AATAATAGAATAGGACCTG-TTTCCTATTTTGTTGGTTTGTGAGGAATG--GGTAATGAT 203 Query 131 AAATACGGATAGTCGGGGGTGTCAGTATTC 160 || | ||| || ||||| | |||||| Sbjct 204 TAAGAGGGACGGTTGGGGGCATTTGTATTC 233 >seq787 Length=264912 Score = 78.8 bits (86), Expect = 1e-12 Identities = 123/171 (72%), Gaps = 5/171 (3%) Strand=Plus/Minus Query 20 TGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCG-AATACATTACCATGGAATAATA 78 ||| ||| ||| || |||||||| ||| ||||| | ||||||||| ||||||||| | Sbjct 149445 TGATAAAGTTATAGTTTTCAAAGCGGGCTTTTGCCAGGAATACATTAGCATGGAATATTT 149386 Query 79 GAATAGGACGTGCGGTTCTATTTTGTAGGTTTCT-AGGACCGCCCGTAATGATAAATACG 137 ||||||||| || | ||| ||||| ||||| | |||| || ||||||| | | | Sbjct 149385 GAATAGGACTTGTT-TCCTACTTTGTTGGTTTGTGAGGAACGG--GTAATGACTAGGAGG 149329 Query 138 GATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTT 188 || ||| | | | || || ||| ||||||||||||||||||| Sbjct 149328 GACAGTAAAAGATATTTTTAATCCGGCCTCAGAGGTGAAATTCTTGGATTT 149278 >seq955 Length=274821 Score = 77.0 bits (84), Expect = 3e-12 Identities = 122/170 (72%), Gaps = 5/170 (3%) Strand=Plus/Minus Query 20 TGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCATGGAATAATA 78 ||| ||||||| || ||| ||| | ||| ||||| |||||||||| ||| ||||| || Sbjct 76335 TGAGAAAATTATAGTGTTAAAATCTGGCTTTTGCCATGAATACATTAGCATAGAATATTA 76276 Query 79 GAATAGGACGTGCGGTTCTATTTTGTAGGTTTCT-AGGACCGCCCGTAATGATAAATACG 137 ||||||||| | | | ||||||||| ||||| | |||| || ||||||| || | | Sbjct 76275 GAATAGGACCT-CTTTCCTATTTTGTTGGTTTGTGAGGAACG--GGTAATGACTAAGAGG 76219 Query 138 GATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATT 187 | || ||| | || || || | |||||| ||||||||||| Sbjct 76218 AACGGTAAGGGACATTTTTAATCCGGAGTTAGAGGTGAGATTCTTGGATT 76169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511994429920