Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kappaphycus_20alvarezii_20[genbank_20GCA_5F002205965.1_202017-06-23] 1,123 sequences; 349,495,466 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq360 286 5e-75 seq347 286 5e-75 seq331 286 5e-75 seq262 286 5e-75 seq249 286 5e-75 seq239 286 5e-75 seq280 259 8e-67 seq354 125 1e-26 seq982 122 1e-25 seq194 111 2e-22 seq265 100 4e-19 >seq360 Length=28839 Score = 286 bits (316), Expect = 5e-75 Identities = 229/275 (83%), Gaps = 1/275 (0%) Strand=Plus/Minus Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61 |||| |||||| ||||||||| |||||| |||||| || |||||||| ||||| Sbjct 6858 GAGGTTGGCTTCCCACTTAGATGCTTTCAGCGGTTATCCTAAACATACTTAGCTACCCAG 6799 Query 62 C-TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTA 120 | | | || |||||| | ||||||| |||||||||| |||| |||||||||||||||| Sbjct 6798 CGTTTACAGTTGGCACAATAACTGGTACACCAGAGGTATGTCTTTCCCGGTCCTCTCGTA 6739 Query 121 CTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCG 180 ||||||| || ||||||||| || ||||| || |||||| ||||||||||||||| Sbjct 6738 CTAAGGAAAGATCCTCTCAATACTCTAACGCCTACACCGGATATGGACCGAACTGTCTCA 6679 Query 181 CGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGAC 240 |||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||| Sbjct 6678 CGACGTTCTGAACCCAGCTCGCGTACCGCTTTCATGGGCGAACAGCCCAACCCTTGGGAC 6619 Query 241 CTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 | || | ||||||||||| || |||||||||||| Sbjct 6618 ATGCTACTGCCCCAGGATGCGATGAGCCGACATCG 6584 >seq347 Length=42671 Score = 286 bits (316), Expect = 5e-75 Identities = 229/275 (83%), Gaps = 1/275 (0%) Strand=Plus/Plus Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61 |||| |||||| ||||||||| |||||| |||||| || |||||||| ||||| Sbjct 32388 GAGGTTGGCTTCCCACTTAGATGCTTTCAGCGGTTATCCTAAACATACTTAGCTACCCAG 32447 Query 62 C-TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTA 120 | | | || |||||| | ||||||| |||||||||| |||| |||||||||||||||| Sbjct 32448 CGTTTACAGTTGGCACAATAACTGGTACACCAGAGGTATGTCTTTCCCGGTCCTCTCGTA 32507 Query 121 CTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCG 180 ||||||| || ||||||||| || ||||| || |||||| ||||||||||||||| Sbjct 32508 CTAAGGAAAGATCCTCTCAATACTCTAACGCCTACACCGGATATGGACCGAACTGTCTCA 32567 Query 181 CGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGAC 240 |||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||| Sbjct 32568 CGACGTTCTGAACCCAGCTCGCGTACCGCTTTCATGGGCGAACAGCCCAACCCTTGGGAC 32627 Query 241 CTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 | || | ||||||||||| || |||||||||||| Sbjct 32628 ATGCTACTGCCCCAGGATGCGATGAGCCGACATCG 32662 >seq331 Length=49663 Score = 286 bits (316), Expect = 5e-75 Identities = 229/275 (83%), Gaps = 1/275 (0%) Strand=Plus/Plus Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61 |||| |||||| ||||||||| |||||| |||||| || |||||||| ||||| Sbjct 13707 GAGGTTGGCTTCCCACTTAGATGCTTTCAGCGGTTATCCTAAACATACTTAGCTACCCAG 13766 Query 62 C-TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTA 120 | | | || |||||| | ||||||| |||||||||| |||| |||||||||||||||| Sbjct 13767 CGTTTACAGTTGGCACAATAACTGGTACACCAGAGGTATGTCTTTCCCGGTCCTCTCGTA 13826 Query 121 CTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCG 180 ||||||| || ||||||||| || ||||| || |||||| ||||||||||||||| Sbjct 13827 CTAAGGAAAGATCCTCTCAATACTCTAACGCCTACACCGGATATGGACCGAACTGTCTCA 13886 Query 181 CGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGAC 240 |||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||| Sbjct 13887 CGACGTTCTGAACCCAGCTCGCGTACCGCTTTCATGGGCGAACAGCCCAACCCTTGGGAC 13946 Query 241 CTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 | || | ||||||||||| || |||||||||||| Sbjct 13947 ATGCTACTGCCCCAGGATGCGATGAGCCGACATCG 13981 Score = 286 bits (316), Expect = 5e-75 Identities = 229/275 (83%), Gaps = 1/275 (0%) Strand=Plus/Minus Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61 |||| |||||| ||||||||| |||||| |||||| || |||||||| ||||| Sbjct 25456 GAGGTTGGCTTCCCACTTAGATGCTTTCAGCGGTTATCCTAAACATACTTAGCTACCCAG 25397 Query 62 C-TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTA 120 | | | || |||||| | ||||||| |||||||||| |||| |||||||||||||||| Sbjct 25396 CGTTTACAGTTGGCACAATAACTGGTACACCAGAGGTATGTCTTTCCCGGTCCTCTCGTA 25337 Query 121 CTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCG 180 ||||||| || ||||||||| || ||||| || |||||| ||||||||||||||| Sbjct 25336 CTAAGGAAAGATCCTCTCAATACTCTAACGCCTACACCGGATATGGACCGAACTGTCTCA 25277 Query 181 CGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGAC 240 |||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||| Sbjct 25276 CGACGTTCTGAACCCAGCTCGCGTACCGCTTTCATGGGCGAACAGCCCAACCCTTGGGAC 25217 Query 241 CTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 | || | ||||||||||| || |||||||||||| Sbjct 25216 ATGCTACTGCCCCAGGATGCGATGAGCCGACATCG 25182 >seq262 Length=94814 Score = 286 bits (316), Expect = 5e-75 Identities = 229/275 (83%), Gaps = 1/275 (0%) Strand=Plus/Minus Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61 |||| |||||| ||||||||| |||||| |||||| || |||||||| ||||| Sbjct 49137 GAGGTTGGCTTCCCACTTAGATGCTTTCAGCGGTTATCCTAAACATACTTAGCTACCCAG 49078 Query 62 C-TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTA 120 | | | || |||||| | ||||||| |||||||||| |||| |||||||||||||||| Sbjct 49077 CGTTTACAGTTGGCACAATAACTGGTACACCAGAGGTATGTCTTTCCCGGTCCTCTCGTA 49018 Query 121 CTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCG 180 ||||||| || ||||||||| || ||||| || |||||| ||||||||||||||| Sbjct 49017 CTAAGGAAAGATCCTCTCAATACTCTAACGCCTACACCGGATATGGACCGAACTGTCTCA 48958 Query 181 CGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGAC 240 |||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||| Sbjct 48957 CGACGTTCTGAACCCAGCTCGCGTACCGCTTTCATGGGCGAACAGCCCAACCCTTGGGAC 48898 Query 241 CTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 | || | ||||||||||| || |||||||||||| Sbjct 48897 ATGCTACTGCCCCAGGATGCGATGAGCCGACATCG 48863 >seq249 Length=73938 Score = 286 bits (316), Expect = 5e-75 Identities = 229/275 (83%), Gaps = 1/275 (0%) Strand=Plus/Plus Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61 |||| |||||| ||||||||| |||||| |||||| || |||||||| ||||| Sbjct 12172 GAGGTTGGCTTCCCACTTAGATGCTTTCAGCGGTTATCCTAAACATACTTAGCTACCCAG 12231 Query 62 C-TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTA 120 | | | || |||||| | ||||||| |||||||||| |||| |||||||||||||||| Sbjct 12232 CGTTTACAGTTGGCACAATAACTGGTACACCAGAGGTATGTCTTTCCCGGTCCTCTCGTA 12291 Query 121 CTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCG 180 ||||||| || ||||||||| || ||||| || |||||| ||||||||||||||| Sbjct 12292 CTAAGGAAAGATCCTCTCAATACTCTAACGCCTACACCGGATATGGACCGAACTGTCTCA 12351 Query 181 CGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGAC 240 |||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||| Sbjct 12352 CGACGTTCTGAACCCAGCTCGCGTACCGCTTTCATGGGCGAACAGCCCAACCCTTGGGAC 12411 Query 241 CTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 | || | ||||||||||| || |||||||||||| Sbjct 12412 ATGCTACTGCCCCAGGATGCGATGAGCCGACATCG 12446 >seq239 Length=192504 Score = 286 bits (316), Expect = 5e-75 Identities = 229/275 (83%), Gaps = 1/275 (0%) Strand=Plus/Minus Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61 |||| |||||| ||||||||| |||||| |||||| || |||||||| ||||| Sbjct 99007 GAGGTTGGCTTCCCACTTAGATGCTTTCAGCGGTTATCCTAAACATACTTAGCTACCCAG 98948 Query 62 C-TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTA 120 | | | || |||||| | ||||||| |||||||||| |||| |||||||||||||||| Sbjct 98947 CGTTTACAGTTGGCACAATAACTGGTACACCAGAGGTATGTCTTTCCCGGTCCTCTCGTA 98888 Query 121 CTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCG 180 ||||||| || ||||||||| || ||||| || |||||| ||||||||||||||| Sbjct 98887 CTAAGGAAAGATCCTCTCAATACTCTAACGCCTACACCGGATATGGACCGAACTGTCTCA 98828 Query 181 CGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGAC 240 |||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||| Sbjct 98827 CGACGTTCTGAACCCAGCTCGCGTACCGCTTTCATGGGCGAACAGCCCAACCCTTGGGAC 98768 Query 241 CTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 | || | ||||||||||| || |||||||||||| Sbjct 98767 ATGCTACTGCCCCAGGATGCGATGAGCCGACATCG 98733 >seq280 Length=59840 Score = 259 bits (286), Expect = 8e-67 Identities = 228/274 (83%), Gaps = 9/274 (3%) Strand=Plus/Minus Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61 ||||||| |||| |||||||||| |||||| |||||| |||| |||||||| ||| | Sbjct 57362 GAGGAGG-CTTCCCGCTTAGATGCTTTCAGCGGTTATCCGTTCCGTACTTAGCTACCCGG 57304 Query 62 CTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTAC 121 |||| ||||| | ||||| || | ||| ||| ||||||| ||||||||| |||| Sbjct 57303 --ATGCTCTTGGT-GAACAACCGGAACCACAGCGGTACGTCCATCTCGGTCCTCT-GTAC 57248 Query 122 TAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGC 181 ||| || ||||| ||||| | ||||||||| || | |||||||||||| ||||||| | Sbjct 57247 TAAAGATAGCTCTCCTCAAGTCTCCTACGCC-ACAGCAGATAGGGACCGA-CTGTCTCAC 57190 Query 182 GACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACC 241 |||||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||| Sbjct 57189 GACGTTCTGAACCCAGCTCGCGTGCCACTTTAAT-TGCGAACAGCCAAACCCTTGGGACC 57131 Query 242 TACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 |||||||||||||| || ||||||||||||||| Sbjct 57130 GACTTCAGCCCCAGG-TGTGACGAGCCGACATCG 57098 >seq354 Length=42089 Score = 125 bits (138), Expect = 1e-26 Identities = 142/188 (76%), Gaps = 3/188 (2%) Strand=Plus/Plus Query 89 ACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTA-AGGACAGCTCCTCTCAAATTTCCT 147 |||||||||| | | |||||||||||||||| | | || || || | ||| | Sbjct 10526 ACCAGAGGTTAAGCTGTTTCGGTCCTCTCGTACTAGAAAAAAGAACCCCT--ATTTTTCA 10583 Query 148 ACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCC 207 || | || | |||||||||||||||||||| |||||||||||||||| ||| ||| || Sbjct 10584 ACTCTTACAGCAGATAGGGACCGAACTGTCTCACGACGTTCTGAACCCAACTCACGTACC 10643 Query 208 TCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGC 267 | ||||| ||||||| | |||||||| ||||||| | ||||||| ||| ||| Sbjct 10644 TTTTTAACTAGCGAACAACTAGACCCTTGGAGTTTACTTCAACTCCAGGATAAGATGAGT 10703 Query 268 CGACATCG 275 |||||||| Sbjct 10704 CGACATCG 10711 Score = 125 bits (138), Expect = 1e-26 Identities = 142/188 (76%), Gaps = 3/188 (2%) Strand=Plus/Plus Query 89 ACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTA-AGGACAGCTCCTCTCAAATTTCCT 147 |||||||||| | | |||||||||||||||| | | || || || | ||| | Sbjct 35777 ACCAGAGGTTAAGCTGTTTCGGTCCTCTCGTACTAGAAAAAAGAACCCCT--ATTTTTCA 35834 Query 148 ACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCC 207 || | || | |||||||||||||||||||| |||||||||||||||| ||| ||| || Sbjct 35835 ACTCTTACAGCAGATAGGGACCGAACTGTCTCACGACGTTCTGAACCCAACTCACGTACC 35894 Query 208 TCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGC 267 | ||||| ||||||| | |||||||| ||||||| | ||||||| ||| ||| Sbjct 35895 TTTTTAACTAGCGAACAACTAGACCCTTGGAGTTTACTTCAACTCCAGGATAAGATGAGT 35954 Query 268 CGACATCG 275 |||||||| Sbjct 35955 CGACATCG 35962 >seq982 Length=88072 Score = 122 bits (134), Expect = 1e-25 Identities = 141/188 (75%), Gaps = 3/188 (2%) Strand=Plus/Minus Query 89 ACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTA-AGGACAGCTCCTCTCAAATTTCCT 147 |||||||||| || || |||||||||||| | | || ||||| | ||| | Sbjct 28633 ACCAGAGGTTAAGTTATTTCGAACCTCTCGTACTAGAAAAAAGAACCTCT--ATTTTTCA 28576 Query 148 ACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCC 207 || | || | |||||||||||||||||||| |||||||||||||||| ||| ||| || Sbjct 28575 ACTCTTACATCAGATAGGGACCGAACTGTCTCACGACGTTCTGAACCCAACTCACGTACC 28516 Query 208 TCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGC 267 | ||||| || |||| | |||||||| ||||||||| ||||||| ||| ||| Sbjct 28515 TTTTTAACTAGCAAACAACTAGACCCTTGGAGTTTACTTCAGCTCCAGGATAAGATGAGT 28456 Query 268 CGACATCG 275 |||||||| Sbjct 28455 CGACATCG 28448 >seq194 Length=123857 Score = 111 bits (122), Expect = 2e-22 Identities = 94/116 (81%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 160 GATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGC 219 |||||||||||||||||||| |||||||||||||||| ||| ||| ||| ||||| || Sbjct 89311 GATAGGGACCGAACTGTCTCACGACGTTCTGAACCCAACTCACGTACCTTTTTAACTAGC 89370 Query 220 GAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 |||| | |||||||| ||||||||| ||||||| ||| || |||||||| Sbjct 89371 AAACAACTAGACCCTTGGAGTTTACTTCAGCTCCAGGATAAGATAAGTCGACATCG 89426 >seq265 Length=48727 Score = 100 bits (110), Expect = 4e-19 Identities = 111/140 (79%), Gaps = 6/140 (4%) Strand=Plus/Plus Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61 |||| |||||| |||| |||| |||||| |||||| | || |||||||| ||||| Sbjct 48588 GAGGTTGGCTTCCA-CTTA-ATGCTTTCAGCGGTTATCC-TAACATACTTAGCTACCCAG 48644 Query 62 C-TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTA 120 | | | || |||||| | ||||||| |||||||| | |||| ||| |||||||||||| Sbjct 48645 CGTTTACAGTTGGCACAATAACTGGTACACCAGAG-TATGTCTTTCC-GGTCCTCTCGTA 48702 Query 121 CTAAGGACAGCTCCTCTCAA 140 ||||||| || ||||||||| Sbjct 48703 CTAAGGAAAGATCCTCTCAA 48722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780791505628