Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kappaphycus_20alvarezii_20[genbank_20GCA_5F002205965.1_202017-06-23] 1,123 sequences; 349,495,466 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq381 127 4e-27 seq360 127 4e-27 seq347 127 4e-27 seq331 127 4e-27 seq268 127 4e-27 seq262 127 4e-27 seq249 127 4e-27 seq239 127 4e-27 seq1105 123 5e-26 >seq381 Length=26942 Score = 127 bits (140), Expect = 4e-27 Identities = 178/244 (73%), Gaps = 12/244 (5%) Strand=Plus/Minus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGT-AGTAGCTTGCGATAAGCTGCGG 68 |||| || ||||||| ||| | |||||||||| ||| | || | |||| | ||| || Sbjct 812 GGTGAATACCTTGGCATTTAGAAGCGATGAAGGGCGTGACTACCA-GCGAAATGCTTCGA 754 Query 69 GGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGG 128 |||| | || | |||||||||| || | ||||||| |||||| | ||| Sbjct 753 GGAGCTGG-AAGTAAGCTTTGATCCGGAGGTACCCGAATGAGGAAACTC-----TTTAT- 701 Query 129 TCATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAG 187 | | | | |||||| ||| ||| |||| ||| ||| || ||||||||||||| || Sbjct 700 --ACTACCTACTGAATTTATAAGTAGGCAAGAGCTAACCTAGCAAACTGAAACATCTTAG 643 Query 188 TAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGA 247 ||||| ||||||||||| ||| | ||||||| |||||| ||||||||||| |||| | Sbjct 642 TAGCTAGAGGAAAAGAAAGCAAAAGCGATTCCCTAAGTAGCGGCGAGCGAAAAGGGAACA 583 Query 248 GCCT 251 |||| Sbjct 582 GCCT 579 >seq360 Length=28839 Score = 127 bits (140), Expect = 4e-27 Identities = 178/244 (73%), Gaps = 12/244 (5%) Strand=Plus/Plus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGT-AGTAGCTTGCGATAAGCTGCGG 68 |||| || ||||||| ||| | |||||||||| ||| | || | |||| | ||| || Sbjct 4126 GGTGAATACCTTGGCATTTAGAAGCGATGAAGGGCGTGACTACCA-GCGAAATGCTTCGA 4184 Query 69 GGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGG 128 |||| | || | |||||||||| || | ||||||| |||||| | ||| Sbjct 4185 GGAGCTGG-AAGTAAGCTTTGATCCGGAGGTACCCGAATGAGGAAACTC-----TTTAT- 4237 Query 129 TCATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAG 187 | | | | |||||| ||| ||| |||| ||| ||| || ||||||||||||| || Sbjct 4238 --ACTACCTACTGAATTTATAAGTAGGCAAGAGCTAACCTAGCAAACTGAAACATCTTAG 4295 Query 188 TAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGA 247 ||||| ||||||||||| ||| | ||||||| |||||| ||||||||||| |||| | Sbjct 4296 TAGCTAGAGGAAAAGAAAGCAAAAGCGATTCCCTAAGTAGCGGCGAGCGAAAAGGGAACA 4355 Query 248 GCCT 251 |||| Sbjct 4356 GCCT 4359 >seq347 Length=42671 Score = 127 bits (140), Expect = 4e-27 Identities = 178/244 (73%), Gaps = 12/244 (5%) Strand=Plus/Minus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGT-AGTAGCTTGCGATAAGCTGCGG 68 |||| || ||||||| ||| | |||||||||| ||| | || | |||| | ||| || Sbjct 35119 GGTGAATACCTTGGCATTTAGAAGCGATGAAGGGCGTGACTACCA-GCGAAATGCTTCGA 35061 Query 69 GGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGG 128 |||| | || | |||||||||| || | ||||||| |||||| | ||| Sbjct 35060 GGAGCTGG-AAGTAAGCTTTGATCCGGAGGTACCCGAATGAGGAAACTC-----TTTAT- 35008 Query 129 TCATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAG 187 | | | | |||||| ||| ||| |||| ||| ||| || ||||||||||||| || Sbjct 35007 --ACTACCTACTGAATTTATAAGTAGGCAAGAGCTAACCTAGCAAACTGAAACATCTTAG 34950 Query 188 TAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGA 247 ||||| ||||||||||| ||| | ||||||| |||||| ||||||||||| |||| | Sbjct 34949 TAGCTAGAGGAAAAGAAAGCAAAAGCGATTCCCTAAGTAGCGGCGAGCGAAAAGGGAACA 34890 Query 248 GCCT 251 |||| Sbjct 34889 GCCT 34886 >seq331 Length=49663 Score = 127 bits (140), Expect = 4e-27 Identities = 178/244 (73%), Gaps = 12/244 (5%) Strand=Plus/Minus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGT-AGTAGCTTGCGATAAGCTGCGG 68 |||| || ||||||| ||| | |||||||||| ||| | || | |||| | ||| || Sbjct 16439 GGTGAATACCTTGGCATTTAGAAGCGATGAAGGGCGTGACTACCA-GCGAAATGCTTCGA 16381 Query 69 GGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGG 128 |||| | || | |||||||||| || | ||||||| |||||| | ||| Sbjct 16380 GGAGCTGG-AAGTAAGCTTTGATCCGGAGGTACCCGAATGAGGAAACTC-----TTTAT- 16328 Query 129 TCATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAG 187 | | | | |||||| ||| ||| |||| ||| ||| || ||||||||||||| || Sbjct 16327 --ACTACCTACTGAATTTATAAGTAGGCAAGAGCTAACCTAGCAAACTGAAACATCTTAG 16270 Query 188 TAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGA 247 ||||| ||||||||||| ||| | ||||||| |||||| ||||||||||| |||| | Sbjct 16269 TAGCTAGAGGAAAAGAAAGCAAAAGCGATTCCCTAAGTAGCGGCGAGCGAAAAGGGAACA 16210 Query 248 GCCT 251 |||| Sbjct 16209 GCCT 16206 Score = 127 bits (140), Expect = 4e-27 Identities = 178/244 (73%), Gaps = 12/244 (5%) Strand=Plus/Plus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGT-AGTAGCTTGCGATAAGCTGCGG 68 |||| || ||||||| ||| | |||||||||| ||| | || | |||| | ||| || Sbjct 22724 GGTGAATACCTTGGCATTTAGAAGCGATGAAGGGCGTGACTACCA-GCGAAATGCTTCGA 22782 Query 69 GGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGG 128 |||| | || | |||||||||| || | ||||||| |||||| | ||| Sbjct 22783 GGAGCTGG-AAGTAAGCTTTGATCCGGAGGTACCCGAATGAGGAAACTC-----TTTAT- 22835 Query 129 TCATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAG 187 | | | | |||||| ||| ||| |||| ||| ||| || ||||||||||||| || Sbjct 22836 --ACTACCTACTGAATTTATAAGTAGGCAAGAGCTAACCTAGCAAACTGAAACATCTTAG 22893 Query 188 TAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGA 247 ||||| ||||||||||| ||| | ||||||| |||||| ||||||||||| |||| | Sbjct 22894 TAGCTAGAGGAAAAGAAAGCAAAAGCGATTCCCTAAGTAGCGGCGAGCGAAAAGGGAACA 22953 Query 248 GCCT 251 |||| Sbjct 22954 GCCT 22957 >seq268 Length=42779 Score = 127 bits (140), Expect = 4e-27 Identities = 178/244 (73%), Gaps = 12/244 (5%) Strand=Plus/Plus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGT-AGTAGCTTGCGATAAGCTGCGG 68 |||| || ||||||| ||| | |||||||||| ||| | || | |||| | ||| || Sbjct 42433 GGTGAATACCTTGGCATTTAGAAGCGATGAAGGGCGTGACTACCA-GCGAAATGCTTCGA 42491 Query 69 GGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGG 128 |||| | || | |||||||||| || | ||||||| |||||| | ||| Sbjct 42492 GGAGCTGG-AAGTAAGCTTTGATCCGGAGGTACCCGAATGAGGAAACTC-----TTTAT- 42544 Query 129 TCATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAG 187 | | | | |||||| ||| ||| |||| ||| ||| || ||||||||||||| || Sbjct 42545 --ACTACCTACTGAATTTATAAGTAGGCAAGAGCTAACCTAGCAAACTGAAACATCTTAG 42602 Query 188 TAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGA 247 ||||| ||||||||||| ||| | ||||||| |||||| ||||||||||| |||| | Sbjct 42603 TAGCTAGAGGAAAAGAAAGCAAAAGCGATTCCCTAAGTAGCGGCGAGCGAAAAGGGAACA 42662 Query 248 GCCT 251 |||| Sbjct 42663 GCCT 42666 >seq262 Length=94814 Score = 127 bits (140), Expect = 4e-27 Identities = 178/244 (73%), Gaps = 12/244 (5%) Strand=Plus/Plus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGT-AGTAGCTTGCGATAAGCTGCGG 68 |||| || ||||||| ||| | |||||||||| ||| | || | |||| | ||| || Sbjct 46413 GGTGAATACCTTGGCATTTAGAAGCGATGAAGGGCGTGACTACCA-GCGAAATGCTTCGA 46471 Query 69 GGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGG 128 |||| | || | |||||||||| || | ||||||| |||||| | ||| Sbjct 46472 GGAGCTGG-AAGTAAGCTTTGATCCGGAGGTACCCGAATGAGGAAACTC-----TTTAT- 46524 Query 129 TCATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAG 187 | | | | |||||| ||| ||| |||| ||| ||| || ||||||||||||| || Sbjct 46525 --ACTACCTACTGAATTTATAAGTAGGCAAGAGCTAACCTAGCAAACTGAAACATCTTAG 46582 Query 188 TAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGA 247 ||||| ||||||||||| ||| | ||||||| |||||| ||||||||||| |||| | Sbjct 46583 TAGCTAGAGGAAAAGAAAGCAAAAGCGATTCCCTAAGTAGCGGCGAGCGAAAAGGGAACA 46642 Query 248 GCCT 251 |||| Sbjct 46643 GCCT 46646 >seq249 Length=73938 Score = 127 bits (140), Expect = 4e-27 Identities = 178/244 (73%), Gaps = 12/244 (5%) Strand=Plus/Minus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGT-AGTAGCTTGCGATAAGCTGCGG 68 |||| || ||||||| ||| | |||||||||| ||| | || | |||| | ||| || Sbjct 14904 GGTGAATACCTTGGCATTTAGAAGCGATGAAGGGCGTGACTACCA-GCGAAATGCTTCGA 14846 Query 69 GGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGG 128 |||| | || | |||||||||| || | ||||||| |||||| | ||| Sbjct 14845 GGAGCTGG-AAGTAAGCTTTGATCCGGAGGTACCCGAATGAGGAAACTC-----TTTAT- 14793 Query 129 TCATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAG 187 | | | | |||||| ||| ||| |||| ||| ||| || ||||||||||||| || Sbjct 14792 --ACTACCTACTGAATTTATAAGTAGGCAAGAGCTAACCTAGCAAACTGAAACATCTTAG 14735 Query 188 TAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGA 247 ||||| ||||||||||| ||| | ||||||| |||||| ||||||||||| |||| | Sbjct 14734 TAGCTAGAGGAAAAGAAAGCAAAAGCGATTCCCTAAGTAGCGGCGAGCGAAAAGGGAACA 14675 Query 248 GCCT 251 |||| Sbjct 14674 GCCT 14671 >seq239 Length=192504 Score = 127 bits (140), Expect = 4e-27 Identities = 178/244 (73%), Gaps = 12/244 (5%) Strand=Plus/Plus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGT-AGTAGCTTGCGATAAGCTGCGG 68 |||| || ||||||| ||| | |||||||||| ||| | || | |||| | ||| || Sbjct 96275 GGTGAATACCTTGGCATTTAGAAGCGATGAAGGGCGTGACTACCA-GCGAAATGCTTCGA 96333 Query 69 GGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGG 128 |||| | || | |||||||||| || | ||||||| |||||| | ||| Sbjct 96334 GGAGCTGG-AAGTAAGCTTTGATCCGGAGGTACCCGAATGAGGAAACTC-----TTTAT- 96386 Query 129 TCATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAG 187 | | | | |||||| ||| ||| |||| ||| ||| || ||||||||||||| || Sbjct 96387 --ACTACCTACTGAATTTATAAGTAGGCAAGAGCTAACCTAGCAAACTGAAACATCTTAG 96444 Query 188 TAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGA 247 ||||| ||||||||||| ||| | ||||||| |||||| ||||||||||| |||| | Sbjct 96445 TAGCTAGAGGAAAAGAAAGCAAAAGCGATTCCCTAAGTAGCGGCGAGCGAAAAGGGAACA 96504 Query 248 GCCT 251 |||| Sbjct 96505 GCCT 96508 >seq1105 Length=37519 Score = 123 bits (136), Expect = 5e-26 Identities = 178/244 (73%), Gaps = 13/244 (5%) Strand=Plus/Plus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGT-AGTAGCTTGCGATAAGCTGCGG 68 |||| || ||||||| ||| | |||||||||| ||| | || | |||| | ||| || Sbjct 35610 GGTGAATACCTTGGCATTTAGAAGCGATGAAGGGCGTGACTACCA-GCGAAATGCTTCGA 35668 Query 69 GGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGG 128 |||| | || | |||||||||| || | ||||||| |||||| | ||| Sbjct 35669 GGAGCTGG-AAGTAAGCTTTGATCCGGAGGTACCCGAATGAGGAAACTC-----TTTAT- 35721 Query 129 TCATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAG 187 | | | | |||||| ||| ||| |||| ||| ||| || ||||||||||||| || Sbjct 35722 --ACTACCTACTGAATTTATAAGTAGGCAAGAGCTAACCTAGC-AACTGAAACATCTTAG 35778 Query 188 TAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGA 247 ||||| ||||||||||| ||| | ||||||| |||||| ||||||||||| |||| | Sbjct 35779 TAGCTAGAGGAAAAGAAAGCAAAAGCGATTCCCTAAGTAGCGGCGAGCGAAAAGGGAACA 35838 Query 248 GCCT 251 |||| Sbjct 35839 GCCT 35842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 918389686368