Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kappaphycus_20alvarezii_20[genbank_20GCA_5F002205965.1_202017-06-23] 1,123 sequences; 349,495,466 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq280 192 1e-46 seq381 145 2e-32 seq360 145 2e-32 seq347 145 2e-32 seq331 145 2e-32 seq268 145 2e-32 seq262 145 2e-32 seq249 145 2e-32 seq239 145 2e-32 seq1105 132 1e-28 >seq280 Length=59840 Score = 192 bits (212), Expect = 1e-46 Identities = 226/303 (75%), Gaps = 11/303 (4%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAA---GCTCCC--- 54 |||||||||||| |||||||||| ||||| || |||||| ||| |||||| Sbjct 45714 GGCTGCTGGCACAGAGTTAGCCGGTGCTTCCTCCACAGGTACCGTCAATCCGCTCCCTAT 45655 Query 55 --ACACGTGGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATC 112 | | | | || || ||||| | | || ||||| | ||| || |||||||| Sbjct 45654 TCAAAAGCGAAACCTTCG--TCCCTACTGACAGTGCTTTACGACCCG-AGGGCCTTCATC 45598 Query 113 CTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCC 172 ||| | | | |||| |||| || ||| |||||| ||| ||||| |||||||||| Sbjct 45597 GCACACACGGCGTTGCTGCGTCAGGCTTTCGCCCATTGCGCAAGATTCCCCACTGCTGCC 45538 Query 173 TCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCC 232 |||||||||||| |||||||||||||||||||| ||||| || | |||||||||| | Sbjct 45537 TCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGATCATCCTCTCAGACCAG 45478 Query 233 CTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAACGCATCCCC 292 |||||| || |||||| |||||||| ||||||| || || |||| ||||| ||| |||| Sbjct 45477 CTATCCGTCTTAGGCTTGGTGGGCCTTTACCCCACCAACAACCTGATGGACCGCGGCCCC 45418 Query 293 ATC 295 ||| Sbjct 45417 ATC 45415 Score = 190 bits (210), Expect = 4e-46 Identities = 226/304 (74%), Gaps = 12/304 (4%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAA----GCTCCC-- 54 |||||||||||| |||||||||| ||||| || |||||| ||| |||||| Sbjct 37424 GGCTGCTGGCACAGAGTTAGCCGGTGCTTCCTCCACAGGTACCGTCAATCCCGCTCCCTA 37365 Query 55 ---ACACGTGGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCAT 111 | | | | || || ||||| | | || ||||| | ||| || ||||||| Sbjct 37364 TTCAAAAGCGAAACCTTCG--TCCCTACTGACAGTGCTTTACGACCCG-AGGGCCTTCAT 37308 Query 112 CCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGC 171 | ||| | | | |||| |||| || ||| |||||| ||| ||||| ||||||||| Sbjct 37307 CGCACACACGGCGTTGCTGCGTCAGGCTTTCGCCCATTGCGCAAGATTCCCCACTGCTGC 37248 Query 172 CTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACC 231 ||||||||||||| |||||||||||||||||||| ||||| || | |||||||||| | Sbjct 37247 CTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGATCATCCTCTCAGACCA 37188 Query 232 CCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAACGCATCCC 291 |||||| || |||||| |||||||| ||||||| || || |||| ||||| ||| ||| Sbjct 37187 GCTATCCGTCTTAGGCTTGGTGGGCCTTTACCCCACCAACAACCTGATGGACCGCGGCCC 37128 Query 292 CATC 295 |||| Sbjct 37127 CATC 37124 >seq381 Length=26942 Score = 145 bits (160), Expect = 2e-32 Identities = 199/279 (71%), Gaps = 18/279 (6%) Strand=Plus/Plus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 ||||||||||||||||||||||||||||||||| | | |||| || Sbjct 2122 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCCTTAAGTACCGTCATT----------- 2170 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 || || ||| | | |||||| |||||||| || || ||||| ||| |||||| Sbjct 2171 --AA----TTCTTCGTTAAGAAAAGAGGTTTACAACCCACAGG-CCTTCTTCCCTCACGC 2223 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | ||| |||| || ||| |||||| || ||||| ||||||||||| |||||| Sbjct 2224 GGTATTGCTCCGTCAGGCTTTCGCCCATTGCGAAAAATTCCCCACTGCTGCCTTCCGTAG 2283 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 ||| |||||||||||||||||||| ||||| || | |||||||| | | ||| || Sbjct 2284 AAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGATCATCCTCTCAAACCAGCTACTGAT 2343 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 ||| | || ||| ||| ||||| || |||| ||||| Sbjct 2344 CGTTGCCTTGGTAAGCCATTACCTTACCAACTAACTAAT 2382 >seq360 Length=28839 Score = 145 bits (160), Expect = 2e-32 Identities = 199/279 (71%), Gaps = 18/279 (6%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 ||||||||||||||||||||||||||||||||| | | |||| || Sbjct 2816 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCCTTAAGTACCGTCATT----------- 2768 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 || || ||| | | |||||| |||||||| || || ||||| ||| |||||| Sbjct 2767 --AA----TTCTTCGTTAAGAAAAGAGGTTTACAACCCACAGG-CCTTCTTCCCTCACGC 2715 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | ||| |||| || ||| |||||| || ||||| ||||||||||| |||||| Sbjct 2714 GGTATTGCTCCGTCAGGCTTTCGCCCATTGCGAAAAATTCCCCACTGCTGCCTTCCGTAG 2655 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 ||| |||||||||||||||||||| ||||| || | |||||||| | | ||| || Sbjct 2654 AAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGATCATCCTCTCAAACCAGCTACTGAT 2595 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 ||| | || ||| ||| ||||| || |||| ||||| Sbjct 2594 CGTTGCCTTGGTAAGCCATTACCTTACCAACTAACTAAT 2556 >seq347 Length=42671 Score = 145 bits (160), Expect = 2e-32 Identities = 199/279 (71%), Gaps = 18/279 (6%) Strand=Plus/Plus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 ||||||||||||||||||||||||||||||||| | | |||| || Sbjct 36429 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCCTTAAGTACCGTCATT----------- 36477 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 || || ||| | | |||||| |||||||| || || ||||| ||| |||||| Sbjct 36478 --AA----TTCTTCGTTAAGAAAAGAGGTTTACAACCCACAGG-CCTTCTTCCCTCACGC 36530 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | ||| |||| || ||| |||||| || ||||| ||||||||||| |||||| Sbjct 36531 GGTATTGCTCCGTCAGGCTTTCGCCCATTGCGAAAAATTCCCCACTGCTGCCTTCCGTAG 36590 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 ||| |||||||||||||||||||| ||||| || | |||||||| | | ||| || Sbjct 36591 AAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGATCATCCTCTCAAACCAGCTACTGAT 36650 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 ||| | || ||| ||| ||||| || |||| ||||| Sbjct 36651 CGTTGCCTTGGTAAGCCATTACCTTACCAACTAACTAAT 36689 >seq331 Length=49663 Score = 145 bits (160), Expect = 2e-32 Identities = 199/279 (71%), Gaps = 18/279 (6%) Strand=Plus/Plus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 ||||||||||||||||||||||||||||||||| | | |||| || Sbjct 17749 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCCTTAAGTACCGTCATT----------- 17797 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 || || ||| | | |||||| |||||||| || || ||||| ||| |||||| Sbjct 17798 --AA----TTCTTCGTTAAGAAAAGAGGTTTACAACCCACAGG-CCTTCTTCCCTCACGC 17850 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | ||| |||| || ||| |||||| || ||||| ||||||||||| |||||| Sbjct 17851 GGTATTGCTCCGTCAGGCTTTCGCCCATTGCGAAAAATTCCCCACTGCTGCCTTCCGTAG 17910 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 ||| |||||||||||||||||||| ||||| || | |||||||| | | ||| || Sbjct 17911 AAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGATCATCCTCTCAAACCAGCTACTGAT 17970 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 ||| | || ||| ||| ||||| || |||| ||||| Sbjct 17971 CGTTGCCTTGGTAAGCCATTACCTTACCAACTAACTAAT 18009 Score = 145 bits (160), Expect = 2e-32 Identities = 199/279 (71%), Gaps = 18/279 (6%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 ||||||||||||||||||||||||||||||||| | | |||| || Sbjct 21414 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCCTTAAGTACCGTCATT----------- 21366 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 || || ||| | | |||||| |||||||| || || ||||| ||| |||||| Sbjct 21365 --AA----TTCTTCGTTAAGAAAAGAGGTTTACAACCCACAGG-CCTTCTTCCCTCACGC 21313 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | ||| |||| || ||| |||||| || ||||| ||||||||||| |||||| Sbjct 21312 GGTATTGCTCCGTCAGGCTTTCGCCCATTGCGAAAAATTCCCCACTGCTGCCTTCCGTAG 21253 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 ||| |||||||||||||||||||| ||||| || | |||||||| | | ||| || Sbjct 21252 AAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGATCATCCTCTCAAACCAGCTACTGAT 21193 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 ||| | || ||| ||| ||||| || |||| ||||| Sbjct 21192 CGTTGCCTTGGTAAGCCATTACCTTACCAACTAACTAAT 21154 >seq268 Length=42779 Score = 145 bits (160), Expect = 2e-32 Identities = 199/279 (71%), Gaps = 18/279 (6%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 ||||||||||||||||||||||||||||||||| | | |||| || Sbjct 41123 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCCTTAAGTACCGTCATT----------- 41075 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 || || ||| | | |||||| |||||||| || || ||||| ||| |||||| Sbjct 41074 --AA----TTCTTCGTTAAGAAAAGAGGTTTACAACCCACAGG-CCTTCTTCCCTCACGC 41022 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | ||| |||| || ||| |||||| || ||||| ||||||||||| |||||| Sbjct 41021 GGTATTGCTCCGTCAGGCTTTCGCCCATTGCGAAAAATTCCCCACTGCTGCCTTCCGTAG 40962 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 ||| |||||||||||||||||||| ||||| || | |||||||| | | ||| || Sbjct 40961 AAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGATCATCCTCTCAAACCAGCTACTGAT 40902 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 ||| | || ||| ||| ||||| || |||| ||||| Sbjct 40901 CGTTGCCTTGGTAAGCCATTACCTTACCAACTAACTAAT 40863 >seq262 Length=94814 Score = 145 bits (160), Expect = 2e-32 Identities = 199/279 (71%), Gaps = 18/279 (6%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 ||||||||||||||||||||||||||||||||| | | |||| || Sbjct 45103 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCCTTAAGTACCGTCATT----------- 45055 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 || || ||| | | |||||| |||||||| || || ||||| ||| |||||| Sbjct 45054 --AA----TTCTTCGTTAAGAAAAGAGGTTTACAACCCACAGG-CCTTCTTCCCTCACGC 45002 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | ||| |||| || ||| |||||| || ||||| ||||||||||| |||||| Sbjct 45001 GGTATTGCTCCGTCAGGCTTTCGCCCATTGCGAAAAATTCCCCACTGCTGCCTTCCGTAG 44942 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 ||| |||||||||||||||||||| ||||| || | |||||||| | | ||| || Sbjct 44941 AAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGATCATCCTCTCAAACCAGCTACTGAT 44882 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 ||| | || ||| ||| ||||| || |||| ||||| Sbjct 44881 CGTTGCCTTGGTAAGCCATTACCTTACCAACTAACTAAT 44843 >seq249 Length=73938 Score = 145 bits (160), Expect = 2e-32 Identities = 199/279 (71%), Gaps = 18/279 (6%) Strand=Plus/Plus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 ||||||||||||||||||||||||||||||||| | | |||| || Sbjct 16214 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCCTTAAGTACCGTCATT----------- 16262 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 || || ||| | | |||||| |||||||| || || ||||| ||| |||||| Sbjct 16263 --AA----TTCTTCGTTAAGAAAAGAGGTTTACAACCCACAGG-CCTTCTTCCCTCACGC 16315 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | ||| |||| || ||| |||||| || ||||| ||||||||||| |||||| Sbjct 16316 GGTATTGCTCCGTCAGGCTTTCGCCCATTGCGAAAAATTCCCCACTGCTGCCTTCCGTAG 16375 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 ||| |||||||||||||||||||| ||||| || | |||||||| | | ||| || Sbjct 16376 AAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGATCATCCTCTCAAACCAGCTACTGAT 16435 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 ||| | || ||| ||| ||||| || |||| ||||| Sbjct 16436 CGTTGCCTTGGTAAGCCATTACCTTACCAACTAACTAAT 16474 >seq239 Length=192504 Score = 145 bits (160), Expect = 2e-32 Identities = 199/279 (71%), Gaps = 18/279 (6%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 ||||||||||||||||||||||||||||||||| | | |||| || Sbjct 94965 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCCTTAAGTACCGTCATT----------- 94917 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 || || ||| | | |||||| |||||||| || || ||||| ||| |||||| Sbjct 94916 --AA----TTCTTCGTTAAGAAAAGAGGTTTACAACCCACAGG-CCTTCTTCCCTCACGC 94864 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | ||| |||| || ||| |||||| || ||||| ||||||||||| |||||| Sbjct 94863 GGTATTGCTCCGTCAGGCTTTCGCCCATTGCGAAAAATTCCCCACTGCTGCCTTCCGTAG 94804 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 ||| |||||||||||||||||||| ||||| || | |||||||| | | ||| || Sbjct 94803 AAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGATCATCCTCTCAAACCAGCTACTGAT 94744 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 ||| | || ||| ||| ||||| || |||| ||||| Sbjct 94743 CGTTGCCTTGGTAAGCCATTACCTTACCAACTAACTAAT 94705 >seq1105 Length=37519 Score = 132 bits (146), Expect = 1e-28 Identities = 168/231 (73%), Gaps = 19/231 (8%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 ||||||||||||||||||||||||||||||||| | | |||| || Sbjct 34303 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCCTTAAGTACCGTCATT----------- 34255 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 || || ||| | | |||||| |||||||| || || ||||| ||| |||||| Sbjct 34254 --AA----TTCTTCGTTAAGAAAAGAGGTTTACAACCCACAGG-CCTTCTTCCCTCACGC 34202 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | ||| |||| || ||| |||||| || ||||| ||||||||||| |||||| Sbjct 34201 GGTATTGCTCCGTCAGGCTTTCGCCCATTGCGAAAAATTCCCCACTGCTGCCTTCCGTAG 34142 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACC 231 ||| |||||||||||||||||||| ||||| || | |||||||| |||| Sbjct 34141 AAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGATCATCCTCTCA-AACC 34092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068787997376