Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kappaphycus_20alvarezii_20[genbank_20GCA_5F002205965.1_202017-06-23] 1,123 sequences; 349,495,466 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq932 223 3e-53 seq864 215 4e-51 seq28 140 3e-28 seq489 127 2e-24 >seq932 Length=795108 Score = 223 bits (246), Expect = 3e-53 Identities = 630/954 (66%), Gaps = 19/954 (2%) Strand=Plus/Minus Query 65702 GCAAGTTGACAGCTGGTCTCGAGTGCGGCAAAATAAATGGTCTCGAAAATG-CGTCGATT 65760 |||||||| ||||||| | | | || |||| || |||||||| ||| | | | || Sbjct 206927 GCAAGTTGGCAGCTGGCCGCAACAGCATGGTAATAGATCGTCTCGAATATGTCCTTGTTT 206868 Query 65761 AAGTTCACGTGCCTCATCGCTCTCGTACGGCATACCCATCAGGACAAAAGTGTCGGCCAG 65820 | | || || ||||| ||||||||| | ||||||| ||||| | || || || ||||| Sbjct 206867 A-GCTCCCGCGCCTCTTCGCTCTCGAATGGCATACGCATCAAAATGAAGGTATCCGCCAG 206809 Query 65821 ACCTTGAACTCCAATACCGATGGGACGATGACGCAAATTGGAACGTCTCGCCTCAGGTAC 65880 ||||| ||||| ||||| || ||||| || | ||| ||||| | | ||||| || Sbjct 206808 CCCTTGGACTCCGATACCTATCGGACGGTGCCTCAAGTTGGACCTCTTGGCCTCCTCAAC 206749 Query 65881 AGGGTAGTAATTGATATCGATAATGCGATTCAAATTGCGTGTCACCACATGCACGATACG 65940 ||||| | ||||| || || || ||||||||| || |||| ||| || Sbjct 206748 CGGGTAAAAGTTGATGTCAATTATCTTGTTCAAATTGTTGGTTACCATTCTCACAATCTC 206689 Query 65941 TCGCAATTGTTCGAAATCAAAATGTTTAGGACGATCGGGAGTGCCGGACACC---ACAAA 65997 | |||| ||| || | || || || | || | || || ||||| Sbjct 206688 CCCCAATGCGTCGTGGTCGTAG-GTAGGGGCGGAGCCATCGT--CAGAAACTCGAACAAA 206632 Query 65998 CTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTC 66057 ||| || |||| || || | ||||| || || | ||| || || | ||| || || Sbjct 206631 TTTGTTGAGTGCAATGGAGGCCAAATTGCACACGGCAACCTCATCGGGTGAGGTGTATTC 206572 Query 66058 GACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTT 66117 | ||| || || |||| ||| ||| || ||||| || | ||||| || || ||||| Sbjct 206571 AATAATCTCAGTACACAAATTTGAGCAACGAATGGTACCGAGGTTCTGCTGGTTGCTCTT 206512 Query 66118 GCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAAT 66177 | || || | |||||| || | |||||| || || |||||||||| || | ||| | Sbjct 206511 CCTGTTACAGGAATCCTTATAGAGCATGTATGGGGTTCCGGTCTCAATCTGCGCCTCCAA 206452 Query 66178 GATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACC---GCCCTACCTTTGCGTTC 66234 || |||| ||||| || || | | | | | || || | |||| || Sbjct 206451 AATAGCGTACCAAACCTTTCGCGCATCAATCTT---TGCCCTTGCTCGCCCTTGTTTCTC 206395 Query 66235 GTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTT 66294 ||| | |||||| | || || ||||| | || || | ||||| || || Sbjct 206394 GTATTTCATGTAGAGCTCCTCAAATTCGTCACCATAAACATCAGCCAGACCGGGTGCCTC 206335 Query 66295 GTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGG 66354 | ||||| | || ||||| | ||| | || || | |||||| | ||| || Sbjct 206334 ATTCGGACAGAAGAGGGACCATGAAGCATTTTCCTCGACCCTTTTCATAAACAAATCTGG 206275 Query 66355 TATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCG 66414 |||||||| | ||||||||||| | ||| || ||||| || |||| ||||| || || Sbjct 206274 AATCCAGAGTCCATAGAAGAGATCCCTTGCACGCTGCTC-TCCTTGCCATGATTCTTCCG 206216 Query 66415 CAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCC 66474 |||||| ||||| || | ||||| |||||||| || |||| |||||| || || | ||| Sbjct 206215 CAAGTCTAGGAAATCGAGAATGTCTGCATGCCAGGGCTCCAAGTAGATTGCAAAGGCGCC 206156 Query 66475 CATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACAT 66534 | |||| || ||||| || || || || || | ||| | ||| | || | | ||| Sbjct 206155 CTTACGCTTCCCGCCGCCCTGATCAACATACCTGGCGGTGTCATTGTACACCCTGAGCAT 206096 Query 66535 CGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCG-ATGGGGGATCCTCGTGCCCGT- 66592 || || | || || || | ||||||||||| ||| || ||| || |||||| | Sbjct 206095 AGGGACAATTCCATTGGAAGTACCATTGGTGCC-TCGAATATAGGA-CCGAGTGCCCCTG 206038 Query 66593 ATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAA 66646 || | ||| || || || ||||| ||||| | ||| || ||| | |||||| Sbjct 206037 ATGTTGTGGACGGCGAGGCCGATACCGCCGGCAGACTTTGAAATGACGGCACAA 205984 >seq864 Length=1598700 Score = 215 bits (238), Expect = 4e-51 Identities = 624/954 (65%), Gaps = 20/954 (2%) Strand=Plus/Plus Query 65702 GCAAGTTGACAGCTGGTCTCGAGTGCGGCAAAATAAATGGTCTCGAAAATG-CGTCGATT 65760 |||||||| || |||| | | | || |||| || |||||||| ||| | | | || Sbjct 468822 GCAAGTTGGCANCTGGCCGCAACAGCATGGTAATAGATCGTCTCGAATATGTCCTTGTTT 468881 Query 65761 AAGTTCACGTGCCTCATCGCTCTCGTACGGCATACCCATCAGGACAAAAGTGTCGGCCAG 65820 | | || || ||||| ||||||||| | ||||||| ||||| | || || || ||||| Sbjct 468882 A-GCTCCCGCGCCTCTTCGCTCTCGAATGGCATACGCATCAAAATGAAGGTATCCGCCAG 468940 Query 65821 ACCTTGAACTCCAATACCGATGGGACGATGACGCAAATTGGAACGTCTCGCCTCAGGTAC 65880 ||||| ||||| ||||| || ||||| || | ||| ||||| | | ||||| || Sbjct 468941 CCCTTGGACTCCGATACCTATCGGACGGTGCCTCAAGTTGGACCTCTTGGCCTCCTCAAC 469000 Query 65881 AGGGTAGTAATTGATATCGATAATGCGATTCAAATTGCGTGTCACCACATGCACGATACG 65940 ||||| | ||||| || || || ||||||||| || |||| ||| || Sbjct 469001 CGGGTAAAAGTTGATGTCAATTATCTTGTTCAAATTGTTGGTTACCATTCTCACAATCTC 469060 Query 65941 TCGCAATTGTTCGAAATCAAAATGTTTAGGACGATCGGGAGTGCCGGACACC---ACAAA 65997 | |||| ||| || | || || || | | | | || | ||||| Sbjct 469061 CCCCAATGCGTCGTGGTCGTAG-GTAGGGGCGGANCC--ATCGNCAGAAANTCGAACAAA 469117 Query 65998 CTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTC 66057 ||| || |||| || || | ||||| || || | ||| || || | ||| || || Sbjct 469118 TTTGTTGAGTGCAATGGAGGCCAANTTGCACACGGCAACCTCATCGGGTGAGGTGTATTC 469177 Query 66058 GACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTT 66117 | ||| || || |||| ||| ||| || ||||| || | ||||| || || ||||| Sbjct 469178 AATAATCTCAGTACACAAATTNGAGCAACGAATGGTACCGAGGTTCTGCTGGTTGCTCTT 469237 Query 66118 GCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAAT 66177 | || || | |||||| || | |||||| || || |||||||||| || | ||| | Sbjct 469238 CCTGTTACAGGAATCCTTATANAGCATGTATGGGGTTCCGGTCTCAATCTGCGCCTCCAA 469297 Query 66178 GATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTA---CGTAC-CGCCCTACCTTTGCGTT 66233 || |||| ||||| || || | | | | | | | |||||| || ||| Sbjct 469298 AATAGCGTACCAAACCTTNCGCGCNTCAATCTTNGCCCTTGCTCGCCCTTGTTTCTCGTA 469357 Query 66234 CGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACT 66293 | |||| | || | || || |||| | || || | ||||| || || Sbjct 469358 TTTCATGT----ANAGCTCCTCAAATTCGNCACCATAAACATCAGCCAGACCGGGTGCCT 469413 Query 66294 TGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAG 66353 | ||||| | || ||||| | ||| | || || | |||||| | ||| | Sbjct 469414 CATTCGGACAGAAGAGGGACCATGAANCATTTTCCTCNACCCTTTTCATAAACAAATCNG 469473 Query 66354 GTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGC 66413 | |||||||| | ||||||||||| | ||| || ||||| || |||| ||||| || | Sbjct 469474 GAATCCAGAGNCCATAGAAGAGATCCCTTGCACGCTGCTCTTCCTTGCCATGATTCTTCC 469533 Query 66414 GCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGC 66473 |||||| || || || | ||||| |||||||| || |||| |||||| || || | || Sbjct 469534 NCAAGTCTAGNAAATCGAGAATGTCTGCATGCCAGGGCTCCAAGTAGATTGCAAAGGCGC 469593 Query 66474 CCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACA 66533 || |||| || ||||| || || || || || | ||| | ||| | || | | || Sbjct 469594 CCTTACGCTTCCCGCCGCCCTGATCAACATACCTGGCGGTGTCATTGTACACCCTNAGCA 469653 Query 66534 TCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCG-ATGGGGGATCCTCGTGCCCGT 66592 | || || | || || || | ||||||||||| ||| || ||| || |||||| | Sbjct 469654 TNGGGACAATTCCATTGGAAGTACCATTGGTGCC-TCGAATATAGGA-CCGAGTGCCCCT 469711 Query 66593 -ATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACA 66645 || | ||| || || || ||||| ||||| | ||| || ||| | ||||| Sbjct 469712 GATGTTGTGGACGGCGAGGCCGATACCGCCGGCAGACTTTGAAATGACGGCACA 469765 >seq28 Length=612614 Score = 140 bits (154), Expect = 3e-28 Identities = 354/535 (66%), Gaps = 15/535 (3%) Strand=Plus/Minus Query 61120 TTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGCGTTTATCG 61179 |||||||||| ||||| ||||| | || ||| |||| |||||||| | ||| Sbjct 279721 TTCTGGACGGCCGAGGAAATCGATCTTTCAGGAGATCTGAAGGACTGGGAATCGCTGTCG 279662 Query 61180 AGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATC 61239 || || |||||||| ||| |||||||| |||||||| || ||||| || || Sbjct 279661 GATGGGGAGAGGCATTTCATCAAAACGGTGTTGGCCTTCTTTGCGGCGTCGGATGGAATT 279602 Query 61240 GTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGT 61299 || || || || | || | || | || || || || ||||||| | ||| Sbjct 279601 GTACTGGAAAACTTGGTAGAGAGATTTTGTAACGACGTACAGTTGCCGGAGGCCAGATGT 279542 Query 61300 TTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATC 61359 ||||| | |||||| || ||||||||||| |||||||| | ||| | || | Sbjct 279541 TTCTATGCGTTCCAGGCGGCGATGGAGAATGTGCACTCGGAAACGTATTCGCTGCTGTTG 279482 Query 61360 GATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATA 61419 |||||||| |||| ||| | || || || | |||| || |||||| ||| Sbjct 279481 GATACGTATATCAAGGACAATACTGAGAAGGATCGGCTTTTCAGAGCGATCGAGGAGATT 279422 Query 61420 CCGGCGGTGAAGCGGAAAGCGGATTGGGCC-TTCAAT----TGGATCACC-AGTACAACG 61473 || |||| || |||||||| ||||| ||| || |||||| | |||| Sbjct 279421 CCTTGCGTGACTCGCAAAGCGGAATGGGCGATTCGATGGATTGGATCGCAGAGTA----- 279367 Query 61474 GCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGA 61533 ||| ||| || |||||| |||| ||||| | || ||||| | || ||| || Sbjct 279366 GCT----TTGCGGAGCGATTGGTGGCGTTTGCAGCTGTGGAGGGGATTTTCTTCTCAGGG 279311 Query 61534 TCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGC 61593 |||||| || || || | ||||||||||| || | ||| | || | || || Sbjct 279310 TCGTTTTGTGCGATTTTCTACTTGAAGAAACGCGGGTTGATGTCTGGATTAACGTTTTCG 279251 Query 61594 AATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTAT 61648 || || ||||| ||||| || ||||| |||||||||| |||| |||||||| Sbjct 279250 AACGAATTGATCTCACGTGATGAGGGATTGCATTGTGAACATGCTTGTTTGCTAT 279196 >seq489 Length=1032923 Score = 127 bits (140), Expect = 2e-24 Identities = 534/827 (65%), Gaps = 36/827 (4%) Strand=Plus/Plus Query 61123 TGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGCGTTTATCGAGC 61182 ||||||| ||||| ||||| | || ||| |||| |||||||| | ||| Sbjct 354583 TGGACGGCCGAGGAAATCGATCTTTCGGGAGATCTGAAGGACTGGGAATCGCTGTCGGAT 354642 Query 61183 GGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTC 61242 || || |||||||| ||| |||||||| |||||||| || ||||| || || || Sbjct 354643 GGGGAGAGGCATTTCATCAAAACGGTGTTGGCCTTCTTTGCGGCGTCGGATGGAATTGTA 354702 Query 61243 AATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTC 61302 || || || | || | || | || || || || ||||||| | ||||| Sbjct 354703 CTGGAAAACTTGGTAGAGAGATTTTGTAACGACGTACAGTTGCCGGAGGCCAGATGTTTT 354762 Query 61303 TACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGAT 61362 | || |||||| || ||||||||||| |||||||| | ||| | || | ||| Sbjct 354763 TGCG--TTCCAGGCGGCGATGGAGAATGTGCACTCGGAAACGTATTCGCTGCTGTTGGAT 354820 Query 61363 ACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCG 61422 ||||| |||| ||| | || || || | |||| || |||||| ||| || Sbjct 354821 ACGTATATCAAGGACAATACTGAGAAGGATCGGCTTTTCAGAGCGATCGAGGAGATTCCC 354880 Query 61423 GCGGTGAAGCGGAAAGCGGATTGGGCC-TTCAAT----TGGATCACC-AGTACAACGGCT 61476 |||| || |||||||| ||||| ||| || |||||| | |||| ||| Sbjct 354881 TGCGTGACTCGCAAAGCGGAATGGGCGATTCGATGGATTGGATCGCAGAGTA-----GCT 354935 Query 61477 ACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCG 61536 ||| || |||||| |||| ||||| | || ||||| | || ||| || ||| Sbjct 354936 ----TTGCGGAGCGATTGGTGGCGTTTGCAGCTGTGGAGGGGATTTTCTTCTCAGGGTCG 354991 Query 61537 TTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAAT 61596 ||| || || || | ||||||||||| || | ||| | || | || || || Sbjct 354992 TTTTGTGCGATTTTCTACTTGAAGAAACGCGGGTTGATGTCTGGATTAACGTTTTCGAAC 355051 Query 61597 GAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGC--TATTCAAAC 61654 || ||||| ||||| || ||||| |||||||||| |||| ||||| ||||| | Sbjct 355052 GAATTGATCTCACGTGATGAGGGATTGCATTGTGAGCATGCTTGTTTGCTGTATTC-TAT 355110 Query 61655 GCTATCTG--GTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGT 61712 | | | | | | | | |||||| || || || ||| || |||| | || Sbjct 355111 GATCCCGGAAGAGCAAAAGCTGTCGGAACGTCGGGTTCAGGAAATTATTTGTGATTCAGT 355170 Query 61713 -AACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATT 61771 | | | || |||| ||| |||| ||| | |||||||| |||| || || ||||| Sbjct 355171 GGAATGT-GAGAAGGAGTTTGTGACAGACTCATTGCCCGTTGCACTGATTGGAATGAA-C 355228 Query 61772 GTGGA-CTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTG--GTCGATTTGG 61828 | ||| | ||| | | || || | ||| ||||| || || |||| | || Sbjct 355229 GCGGATATGATGAGGGAATACATCTCTTACTGTGCAGACCGATTGCTGCTGTCG-CTGGG 355287 Query 61829 GTATG---AAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGC 61885 |||| ||| | || ||| | | | | |||||||| | ||||| | ||||| Sbjct 355288 TTATGGGAAAG----TATACAATGCAACACAGCCATTTGACTGGATGGAATTAATTTCCA 355343 Query 61886 TGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCAA 61932 | || || ||||| || |||||||||| |||||| || || || ||| Sbjct 355344 TTGAGGGGAAGACCAACTTTTTCGAGAGACGTGTGGGTGAATACCAA 355390 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397562558660720