Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monocercomonoides_20sp._20PA203_20[genbank_20GCA_5F001643675.1_20201 6-05-13] 2,095 sequences; 74,721,868 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq428 107 3e-21 seq2009 105 1e-20 seq1478 105 1e-20 seq1318 100 5e-19 >seq428 Length=53738 Score = 107 bits (118), Expect = 3e-21 Identities = 98/123 (80%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||| |||| | |||||||| ||||||| | ||| | ||| Sbjct 44542 GTACGAGAGGAACCCTAGAATC--GTATAATTGGCATTTGCGGTTAGTTGAGAAACTAGT 44599 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 |||||||||||||||| | | ||||||| ||||||||||||||||||||||| || ||| Sbjct 44600 GCCGCGAAGCTACCATACGTTAGATTATGACTGAACGCCTCTAAGTCAGAATCTATTCCA 44659 Query 121 GAA 123 ||| Sbjct 44660 GAA 44662 >seq2009 Length=2393 Score = 105 bits (116), Expect = 1e-20 Identities = 97/122 (80%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||| |||| | |||||||| ||||||| | ||| | ||| Sbjct 1777 GTACGAGAGGAACCCTAGAATC--GTATAATTGGCATTTGCGGTTAGTTGAGAAACTAGT 1720 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 |||||||||||||||| | | ||||||| ||||||||||||||||||||||| || ||| Sbjct 1719 GCCGCGAAGCTACCATACGTTAGATTATGACTGAACGCCTCTAAGTCAGAATCTATTCCA 1660 Query 121 GA 122 || Sbjct 1659 GA 1658 >seq1478 Length=8047 Score = 105 bits (116), Expect = 1e-20 Identities = 97/122 (80%), Gaps = 2/122 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||| |||| | |||||||| ||||||| | ||| | ||| Sbjct 6274 GTACGAGAGGAACCCTAGAATC--GTATAATTGGCATTTGCGGTTAGTTGAGAAACTAGT 6331 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 |||||||||||||||| | | ||||||| ||||||||||||||||||||||| || ||| Sbjct 6332 GCCGCGAAGCTACCATACGTTAGATTATGACTGAACGCCTCTAAGTCAGAATCTATTCCA 6391 Query 121 GA 122 || Sbjct 6392 GA 6393 >seq1318 Length=13180 Score = 100 bits (110), Expect = 5e-19 Identities = 96/122 (79%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||| |||||||||| |||| | |||||||| ||||||| | ||| | ||| Sbjct 2829 GTATGAGAGGAACCCTAGAATC--GTATAATTGGCATTTGCGGTTAGTTGAGAAACTAGT 2772 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 |||||||||||||||| | | ||||||| ||||||||||||||||||||||| || ||| Sbjct 2771 GCCGCGAAGCTACCATACGTTAGATTATGACTGAACGCCTCTAAGTCAGAATCTATTCCA 2712 Query 121 GA 122 || Sbjct 2711 GA 2710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819183374080