Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq306 102 1e-19 >seq306 Length=2205 Score = 102 bits (112), Expect = 1e-19 Identities = 171/243 (70%), Gaps = 21/243 (9%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||| |||||||||||| |||| | | | |||||| | ||||||||||||||| | Sbjct 240 GTACAAAAGGCAGGGACGTAATCAATGTG-GTATGATGAACCACGCTTACTAGGAATT-C 297 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCC---CATCACGATGAAATTTCAAAGA 117 |||||| | || | || |||| || ||||| ||| ||| || || |||| Sbjct 298 CTCGTTCACGAGGATG--TTCCAATCCTCGATCCCTGTCATAACGGTGT--TTGAAAAGT 353 Query 118 TTACCCGGACCTGTC-GGCCAAGGTGATAGA-----------CTCGTTGAATACATCAGT 165 |||||| ||| | || |||| | || | |||| || | | | | Sbjct 354 TTACCCAATCCTATTAGGATAAGGGGTTAAAAAACCATAGCGCTCGCTGGTACCGTTATT 413 Query 166 GTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 |||| ||||||| |||||| ||||||||| |||||||||||||||||| |||| || || Sbjct 414 GTAGTACGCGTGCAGCCCAGGACATCTAAGAGCATCACAGACCTGTTATGGCCTAAATCT 473 Query 226 TCC 228 ||| Sbjct 474 TCC 476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751995818410