Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq306 122 1e-25 >seq306 Length=2205 Score = 122 bits (134), Expect = 1e-25 Identities = 99/119 (83%), Gaps = 1/119 (1%) Strand=Plus/Plus Query 140 GGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCAC 199 ||||| ||| ||| | ||||||||||||||||| |||||||| ||||| |||||||||| Sbjct 594 GGCTAGTTAA-AGGCTTAGGTCTCGTTCGTTATCTGAATTAACAAGACAGATCACTCCAC 652 Query 200 CAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||| ||||||||||||| ||| ||| | ||||||||||| ||||| || ||||| Sbjct 653 GAACTGGAAACGGCCATGCACTACCCACCACACAATCAAGAAAGGGCTATTAACCTGTC 711 Score = 93.3 bits (102), Expect = 7e-17 Identities = 95/120 (79%), Gaps = 8/120 (7%) Strand=Plus/Plus Query 3 CTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGAC 62 |||| ||| |||| | ||||| ||||||| |||||| ||||||||| ||||||||||| Sbjct 396 CTCGCTGGTACCGTTATTGTAGTACGCGTGCAGCCCAGGACATCTAAGAGCATCACAGAC 455 Query 63 CTGTTATTGCCTCAAACTTC--CATTGGCTGGAAG--CCAAT--AGTCCCTCTAAGAAGC 116 ||||||| |||| || |||| |||| || ||| | ||| ||||||| |||||||| Sbjct 456 CTGTTATGGCCTAAATCTTCCTCATT--CTACAAGAACGAATGAAGTCCCTTTAAGAAGC 513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796795569294