Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq25 89.7 2e-15 seq38 75.2 4e-11 >seq25 Length=130102 Score = 89.7 bits (98), Expect = 2e-15 Identities = 57/62 (92%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 381 CTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGA 440 ||| || |||||||||||||||||| ||||| ||||||||||||||||||||||||||| Sbjct 39913 CTCATTGTTCCATTCATGCGCGTCACAAATTAAATGACGAGGCATTTGGCTACCTTAAGA 39972 Query 441 GA 442 || Sbjct 39973 GA 39974 >seq38 Length=237352 Score = 75.2 bits (82), Expect = 4e-11 Identities = 96/129 (74%), Gaps = 9/129 (7%) Strand=Plus/Plus Query 189 AAGTaaaaaaaCGA-TAAGGG-TAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTA 246 || || || ||||| ||||| |||||||||| || | ||||||| |||||||| || Sbjct 50007 AAATACAATAACGAATAAGGAATAGTGGTATTACATTGTCGCCGAA---GCTCCCACCTA 50063 Query 247 TTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTC 306 | ||| ||||| || ||| |||| | | |||||||||||| ||||||| || | Sbjct 50064 TACTATACCTCCTTCGTTATTCTACAACGCCAGACTAGAGTCAAACTCAACACGG----C 50119 Query 307 TTTCCCCGC 315 |||||| || Sbjct 50120 TTTCCCTGC 50128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635190613952