Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_009763.3 Length=42973 Score E Sequences producing significant alignments: (Bits) Value seq565 416 8e-112 seq554 80.6 7e-11 >seq565 Length=3067 Score = 416 bits (460), Expect = 8e-112 Identities = 238/243 (98%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 39985 AGGTAATAGAATAAGCAGTTTTGGTAATTTTAGCGCAGTTTGATAATTATATATAAAGGT 40044 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2825 AGGTAATAGAATAAGCAGTTTTGGTAATTTTAGCGCAGTTTGATAATTATATATAAAGGT 2884 Query 40045 TTGGCAAGTTATGAAATGTCTGCCAAACCTTTATATAAAAAAGAAATAGCTACCTTTTAA 40104 |||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||| Sbjct 2885 TTGGCAAGTTATGAAATGTCTGCCAAACCTTTATATAAAAAAAAAAAAGCCACCTTTTGC 2944 Query 40105 TTTATGTAACTACTATTAGTATGCATATTCATTAGTTTTACCAGGACCATTAATTACATA 40164 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2945 TTTATGTAACTACTATTAGTATGCATATTCATTAGTTTTACCAGGACCATTAATTACATA 3004 Query 40165 AGATGATTTAGACTCTCCTTTTTTAAAGAAGTATGTTTTATACATTTTACCTAGTAACTC 40224 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3005 AGATGATTTAGACTCTCCTTTTTTAAAGAAGTATGTTTTATACATTTTACCTAGTAACTC 3064 Query 40225 AAC 40227 ||| Sbjct 3065 AAC 3067 >seq554 Length=1012 Score = 80.6 bits (88), Expect = 7e-11 Identities = 64/76 (84%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 40803 TGCTATATTTATCTTAGACACAGCAATGTGTTCAAATTTTCATCTATTCATAAGCTAGCC 40862 ||||||| | | ||||||||||||||||||||||| ||| ||||||| || | ||||| Sbjct 362 TGCTATAATCGTTTTAGACACAGCAATGTGTTCAAAATTTAATCTATTTGTACGTTAGCC 421 Query 40863 TTCGGGCT-AGTTTTT 40877 |||||||| | ||||| Sbjct 422 TTCGGGCTGACTTTTT 437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137391063501780