Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq93 170 2e-37 seq36 131 1e-25 >seq93 Length=103736 Score = 170 bits (188), Expect = 2e-37 Identities = 386/579 (67%), Gaps = 5/579 (1%) Strand=Plus/Minus Query 61042 GAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTAC 61101 || ||||| | ||||||||| | ||||| ||||| || | | ||||| |||||| Sbjct 85462 GAAAATCCACATCGTTTCGTTCTCTTCCCAATCGAACATCAAAAGGTTTGGGAGATGTAC 85403 Query 61102 AAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAAT 61161 || ||||| || || |||||||| | || || || ||| | || ||| || | Sbjct 85402 AAGAAGGCCATGGCATCTTTCTGGACTGCTGAAGAAGTGGATCTCCACACAGATATTGCT 85343 Query 61162 GACTGGGAGCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTT 61221 | ||||| | | | | ||||||||| ||||| || ||| ||||| |||||| Sbjct 85342 CAATGGGAAACTCTCAATACCAATGAACAACACTTCATCAAGACTGTTTTGGCCTTCTTT 85283 Query 61222 GCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAA 61281 || || || || ||||| || |||||||| || | ||| || | || || ||| Sbjct 85282 GCTGCCTCCGATGGTATTGTGAATGAGAACTTGTGTCAACAATTTATGGCTGAAGTTCAA 85223 Query 61282 GTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAG 61341 | | || || | |||||||| || ||||| |||||||| |||||| | || | ||| Sbjct 85222 ATTCCTGAAGCCAGATGTTTCTATGGATTCCAAATTGCCATTGAGAATATTCATGCAGAG 85163 Query 61342 ATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTC 61401 ||||| ||| || || || ||||| | ||| | ||| | | || | ||| Sbjct 85162 ATGTATTCAACTCTAATTGAAACCTACATTAAGGACACGAGAGAAAGACATCGTCTCTTC 85103 Query 61402 AATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATC 61461 |||||||| || || | || | || | ||| || |||||| || || |||||| Sbjct 85102 AATGCCATTGATACTGTTCCATCCGTTCAAAAGAAGGCTCGTTGGGCTTTGAAATGGATC 85043 Query 61462 -ACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGT 61520 || | | ||| |||| |||||||||| | || ||||| || || ||| | Sbjct 85042 AACTCGGATAAC----TTGTTTGCTGAACGATTGATTGCCTTTGCTTGTGTGGAAGGTAT 84987 Query 61521 ATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGG 61580 || || |||||||| || | ||||||||| ||||||| | || | ||||| || Sbjct 84986 CTTCTTTAGTGGATCTTTCTGTTCCATCTTTTGGATGAAGAAGAGAGGTTTGATGCCTGG 84927 Query 61581 TCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGG 61619 |||||||| |||||| ||||| || || || || || Sbjct 84926 ATTGACCTTCTCCAATGAATTGATTTCTCGAGATGAAGG 84888 >seq36 Length=122865 Score = 131 bits (144), Expect = 1e-25 Identities = 680/1074 (63%), Gaps = 36/1074 (3%) Strand=Plus/Plus Query 65698 CTTGGCAAGTTGACAGCTGG-TCTCGAGTGCGGCAAAATAAATGGTCTCGAAAATGCGTC 65756 |||||||| || ||| |||| | || | ||| |||||||| || || |||||||| || Sbjct 115139 CTTGGCAACTTCACAACTGGCTGTCAA-TGCAGCAAAATATATTGTTTCGAAAATTTCTC 115197 Query 65757 GATT-AAGTTCACGTGCCTCATCGCTCTCGTACGGCATACCCATCAGGACAAAAGTGTCG 65815 |||| || || | || || || |||||| | || | | |||| || ||| | ||| Sbjct 115198 GATTCAAAATCTTG-GCTTCTTCACTCTCGAAGGGAAGATGCATCTTGATAAAGGCATCG 115256 Query 65816 GCCAGACCTTGAACTCCAATACCGATGGGACGATGACGCAAATTGGAACGTCTCGCCTCA 65875 |||| || ||||| || | ||| ||||||||||| | || ||| ||| || || Sbjct 115257 GCCAATCCCTGAACACCCAAACCAATGGGACGATGTCTCATATTACTCTTTCTAGCTTCC 115316 Query 65876 GGTACAGGGTAGTAATTGATATCGATAATGCGATTCAAATTGCGTGTCACCACATGCACG 65935 || || || ||||| | || || || |||||||| | || Sbjct 115317 TCAACTGGATAATAATTCTTGTCAATGATCTTGTTCAAATT-----------CTTG---- 115361 Query 65936 ATACGTCGCAATTGTTCGAAATCAAAA----TGTTTAGGACGATCGGGA-GTGCCGGA-C 65989 || |||||| | || | ||| |||| | || | || | ||| || | Sbjct 115362 ----GTGGCAATTTTGACAATTTCAAACAATTGTTCATGATCGTAGGTACGTGTCGTCTC 115417 Query 65990 ACC-ACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGC 66048 | ||| |||| ||||| |||| | ||| | ||| || ||||||| || || ||||| Sbjct 115418 ATTGACATACTTTGGAAGTGCAATACTTGCCAAGTTACACACAGCTACTTCATCTGGAGC 115477 Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 || || || | |||||| || |||| || | | || || || | ||| ||||| Sbjct 115478 TGTGTATTCAATAATTTCAGTACACAAGTTGGAGGATTTGATCGTTCCAAGATTTTGTTG 115537 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 ||| || | ||| ||||||||||| || | |||||| ||| || ||||||| ||| Sbjct 115538 ATTTGATTTTCTATTACATGCATCCTTATAAAGCATGTAAGGAACACCAGTCTCAATTTG 115597 Query 66169 GGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTACCTTT 66228 | |||||| || || |||||| | | || || ||| || | ||| | Sbjct 115598 TGCCTCAATAATTGCAAACCAAAGCTCTTGAGCACGAACGACACGGCGTGCACGACCCTC 115657 Query 66229 GCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGG 66288 || ||| | || | | | || ||||||||| || || | || | || Sbjct 115658 CTTCTCATAACGCAAATACAATTCATTAAACTCTTCACCCCACACATCAGCAAGTCCAGG 115717 Query 66289 ACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAG 66348 | | | ||||| | || ||||||| | ||||| | || | |||||| | Sbjct 115718 AGCTTCATTAGGACAAAAGAGTGACCAATGAGAATCCTCCTTCACTCTCTCCATAAACAA 115777 Query 66349 ATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATT 66408 |||| | ||| | | | || | ||| || ||||| ||||| | || ||| Sbjct 115778 ATCATTCACCCACAAACCCAAAAACAAATCTCGAGCTCGAATTTCCTCCTTTCCAGTATT 115837 Query 66409 TTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAA 66468 || | ||| || | || ||||| || |||| |||||| || |||| || | ||| || Sbjct 115838 CTTTCTCAAATCTAAAAAATCAAAAATATCGGAATGCCAAGGCTCCAAATAAACGGCAAA 115897 Query 66469 CGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACG 66528 | || | ||||| || |||||||| || ||||| || || | |||||| ||||| Sbjct 115898 GGCTCCTTTTCGTTTACCACCACCTTGATCCACGTAACGGGCAGTGTCGTTGAATACACG 115957 Query 66529 CAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCG-ATGGGGGATCCTCGTG 66587 | ||| || | ||| || || || | || ||||| || ||| ||| |||||| | Sbjct 115958 AAGCATGGGAATGAGTCCATTGGAGGTTCCGTTGGTTCC-TCGAATGTAGGATCCAGAGG 116016 Query 66588 CCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAAT 66647 | || || | ||||| || || |||||||| || |||| || || ||||| Sbjct 116017 CACGAATGTTATGAACGGACAAGCCGATACCACCAGCACTCTTGGATATCAAGGCACA-- 116074 Query 66648 CGGC--CACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCA 66705 || | | ||| | | || || |||||| || | || |||| || | | |||| Sbjct 116075 CGTCTTGAGTGTATCGTAAATACCTGAAATGGAATCGTCTTTCATGGCCACTAAGAAGCA 116134 Query 66706 TGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTG 66759 ||||| | ||| || |||| || | || |||||| || || | ||||| Sbjct 116135 AGAACTCATTTGAGGAGTGGGAGTACCAGCATTGAAGAGAGTAGGAGAGGCGTG 116188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397565218763360