Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20gruberi_20[genbank_20GCA_5F000004985.1_202010-01-20] 784 sequences; 40,964,085 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq539 96.9 5e-18 seq455 96.9 5e-18 seq350 96.9 5e-18 seq292 77.0 5e-12 >seq539 Length=1556 Score = 96.9 bits (106), Expect = 5e-18 Identities = 170/243 (70%), Gaps = 21/243 (9%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||| |||||||||||| |||| | | | |||||| | ||||||||||||||| | Sbjct 387 GTACAAAAGGCAGGGACGTAATCAATGTG-GTATGATGAACCACGCTTACTAGGAATT-C 444 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCC---CATCACGATGAAATTTCAAAGA 117 |||||| | || | || |||| || ||||| ||| ||| || || |||| Sbjct 445 CTCGTTCACGAGGATG--TTCCAATCCTCGATCCCTGTCATAACGGTGT--TTGAAAAGT 500 Query 118 TTACCCGGACCTGTC-GGCCAAGGTGATAGA-----------CTCGTTGAATACATCAGT 165 || ||| ||| | || |||| | || | |||| || | | | | Sbjct 501 TTTCCCAATCCTATTAGGATAAGGGGTTATAAAACCATAGCGCTCGCTGGTACCGTTATT 560 Query 166 GTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 |||| ||||||| |||||| ||||||||| |||||||||||||||||| |||| || || Sbjct 561 GTAGTACGCGTGCAGCCCAGGACATCTAAGAGCATCACAGACCTGTTATGGCCTAAATCT 620 Query 226 TCC 228 ||| Sbjct 621 TCC 623 >seq455 Length=1130 Score = 96.9 bits (106), Expect = 5e-18 Identities = 170/243 (70%), Gaps = 21/243 (9%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||| |||||||||||| |||| | | | |||||| | ||||||||||||||| | Sbjct 777 GTACAAAAGGCAGGGACGTAATCAATGTG-GTATGATGAACCACGCTTACTAGGAATT-C 720 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCC---CATCACGATGAAATTTCAAAGA 117 |||||| | || | || |||| || ||||| ||| ||| || || |||| Sbjct 719 CTCGTTCACGAGGATG--TTCCAATCCTCGATCCCTGTCATAACGGTGT--TTGAAAAGT 664 Query 118 TTACCCGGACCTGTC-GGCCAAGGTGATAGA-----------CTCGTTGAATACATCAGT 165 || ||| ||| | || |||| | || | |||| || | | | | Sbjct 663 TTTCCCAATCCTATTAGGATAAGGGGTTATAAAACCATAGCGCTCGCTGGTACCGTTATT 604 Query 166 GTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 |||| ||||||| |||||| ||||||||| |||||||||||||||||| |||| || || Sbjct 603 GTAGTACGCGTGCAGCCCAGGACATCTAAGAGCATCACAGACCTGTTATGGCCTAAATCT 544 Query 226 TCC 228 ||| Sbjct 543 TCC 541 >seq350 Length=3225 Score = 96.9 bits (106), Expect = 5e-18 Identities = 170/243 (70%), Gaps = 21/243 (9%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||| |||||||||||| |||| | | | |||||| | ||||||||||||||| | Sbjct 282 GTACAAAAGGCAGGGACGTAATCAATGTG-GTATGATGAACCACGCTTACTAGGAATT-C 339 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCC---CATCACGATGAAATTTCAAAGA 117 |||||| | || | || |||| || ||||| ||| ||| || || |||| Sbjct 340 CTCGTTCACGAGGATG--TTCCAATCCTCGATCCCTGTCATAACGGTGT--TTGAAAAGT 395 Query 118 TTACCCGGACCTGTC-GGCCAAGGTGATAGA-----------CTCGTTGAATACATCAGT 165 || ||| ||| | || |||| | || | |||| || | | | | Sbjct 396 TTTCCCAATCCTATTAGGATAAGGGGTTATAAAACCATAGCGCTCGCTGGTACCGTTATT 455 Query 166 GTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 |||| ||||||| |||||| ||||||||| |||||||||||||||||| |||| || || Sbjct 456 GTAGTACGCGTGCAGCCCAGGACATCTAAGAGCATCACAGACCTGTTATGGCCTAAATCT 515 Query 226 TCC 228 ||| Sbjct 516 TCC 518 >seq292 Length=7486 Score = 77.0 bits (84), Expect = 5e-12 Identities = 51/57 (89%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 172 CGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||||| |||||| ||||||||| |||||||||||||||||| |||| || ||||| Sbjct 310 CGCGTGCAGCCCAGGACATCTAAGAGCATCACAGACCTGTTATGGCCTAAATCTTCC 254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751994288560