Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20gruberi_20[genbank_20GCA_5F000004985.1_202010-01-20] 784 sequences; 40,964,085 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq777 104 1e-19 seq732 104 1e-19 seq369 104 1e-19 >seq777 Length=1008 Score = 104 bits (114), Expect = 1e-19 Identities = 107/138 (78%), Gaps = 3/138 (2%) Strand=Plus/Plus Query 548 TGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAA 607 ||||| |||| | | || | | ||||||||| || ||||||||||| | | || |||| Sbjct 328 TGAGTTAGAGTAAATATGCTAGTACCCGAAAGGTGATGAACTATGCCCGGACTGGTTGAA 387 Query 608 GCCAGAGGAAACTCTGGTGGAGG--CTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAA 665 ||||| |||| |||||||||| ||| | ||||| ||| ||||||||||| ||||| Sbjct 388 GCCAGGAGAAATCCTGGTGGAGGACCTC-CCGCGGTGCTGACGTGCAAATCGCTCGTCCG 446 Query 666 ATTTGGGTATAGGGGCGA 683 | |||||||||| |||| Sbjct 447 AGCTGGGTATAGGAGCGA 464 >seq732 Length=1081 Score = 104 bits (114), Expect = 1e-19 Identities = 107/138 (78%), Gaps = 3/138 (2%) Strand=Plus/Minus Query 548 TGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAA 607 ||||| |||| | | || | | ||||||||| || ||||||||||| | | || |||| Sbjct 291 TGAGTTAGAGTAAATATGCTAGTACCCGAAAGGTGATGAACTATGCCCGGACTGGTTGAA 232 Query 608 GCCAGAGGAAACTCTGGTGGAGG--CTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAA 665 ||||| |||| |||||||||| ||| | ||||| ||| ||||||||||| ||||| Sbjct 231 GCCAGGAGAAATCCTGGTGGAGGACCTC-CCGCGGTGCTGACGTGCAAATCGCTCGTCCG 173 Query 666 ATTTGGGTATAGGGGCGA 683 | |||||||||| |||| Sbjct 172 AGCTGGGTATAGGAGCGA 155 >seq369 Length=3726 Score = 104 bits (114), Expect = 1e-19 Identities = 107/138 (78%), Gaps = 3/138 (2%) Strand=Plus/Plus Query 548 TGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAA 607 ||||| |||| | | || | | ||||||||| || ||||||||||| | | || |||| Sbjct 2489 TGAGTTAGAGTAAATATGCTAGTACCCGAAAGGTGATGAACTATGCCCGGACTGGTTGAA 2548 Query 608 GCCAGAGGAAACTCTGGTGGAGG--CTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAA 665 ||||| |||| |||||||||| ||| | ||||| ||| ||||||||||| ||||| Sbjct 2549 GCCAGGAGAAATCCTGGTGGAGGACCTC-CCGCGGTGCTGACGTGCAAATCGCTCGTCCG 2607 Query 666 ATTTGGGTATAGGGGCGA 683 | |||||||||| |||| Sbjct 2608 AGCTGGGTATAGGAGCGA 2625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079983183200