Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20gruberi_20[genbank_20GCA_5F000004985.1_202010-01-20] 784 sequences; 40,964,085 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq539 122 1e-25 seq455 122 1e-25 seq369 122 1e-25 seq292 122 1e-25 seq350 118 2e-24 >seq539 Length=1556 Score = 122 bits (134), Expect = 1e-25 Identities = 99/119 (83%), Gaps = 1/119 (1%) Strand=Plus/Plus Query 140 GGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCAC 199 ||||| ||| ||| | ||||||||||||||||| |||||||| ||||| |||||||||| Sbjct 739 GGCTAGTTAA-AGGCTTAGGTCTCGTTCGTTATCTGAATTAACAAGACAGATCACTCCAC 797 Query 200 CAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||| ||||||||||||| ||| ||| | ||||||||||| ||||| || ||||| Sbjct 798 GAACTGGAAACGGCCATGCACTACCCACCACACAATCAAGAAAGGGCTATTAACCTGTC 856 Score = 87.8 bits (96), Expect = 3e-15 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 3 CTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGAC 62 |||| ||| |||| | ||||| ||||||| |||||| ||||||||| ||||||||||| Sbjct 543 CTCGCTGGTACCGTTATTGTAGTACGCGTGCAGCCCAGGACATCTAAGAGCATCACAGAC 602 Query 63 CTGTTATTGCCTCAAACTTCC 83 ||||||| |||| || ||||| Sbjct 603 CTGTTATGGCCTAAATCTTCC 623 >seq455 Length=1130 Score = 122 bits (134), Expect = 1e-25 Identities = 99/119 (83%), Gaps = 1/119 (1%) Strand=Plus/Minus Query 140 GGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCAC 199 ||||| ||| ||| | ||||||||||||||||| |||||||| ||||| |||||||||| Sbjct 425 GGCTAGTTAA-AGGCTTAGGTCTCGTTCGTTATCTGAATTAACAAGACAGATCACTCCAC 367 Query 200 CAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||| ||||||||||||| ||| ||| | ||||||||||| ||||| || ||||| Sbjct 366 GAACTGGAAACGGCCATGCACTACCCACCACACAATCAAGAAAGGGCTATTAACCTGTC 308 Score = 87.8 bits (96), Expect = 3e-15 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 3 CTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGAC 62 |||| ||| |||| | ||||| ||||||| |||||| ||||||||| ||||||||||| Sbjct 621 CTCGCTGGTACCGTTATTGTAGTACGCGTGCAGCCCAGGACATCTAAGAGCATCACAGAC 562 Query 63 CTGTTATTGCCTCAAACTTCC 83 ||||||| |||| || ||||| Sbjct 561 CTGTTATGGCCTAAATCTTCC 541 >seq369 Length=3726 Score = 122 bits (134), Expect = 1e-25 Identities = 99/119 (83%), Gaps = 1/119 (1%) Strand=Plus/Minus Query 140 GGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCAC 199 ||||| ||| ||| | ||||||||||||||||| |||||||| ||||| |||||||||| Sbjct 846 GGCTAGTTAA-AGGCTTAGGTCTCGTTCGTTATCTGAATTAACAAGACAGATCACTCCAC 788 Query 200 CAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||| ||||||||||||| ||| ||| | ||||||||||| ||||| || ||||| Sbjct 787 GAACTGGAAACGGCCATGCACTACCCACCACACAATCAAGAAAGGGCTATTAACCTGTC 729 >seq292 Length=7486 Score = 122 bits (134), Expect = 1e-25 Identities = 99/119 (83%), Gaps = 1/119 (1%) Strand=Plus/Minus Query 140 GGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCAC 199 ||||| ||| ||| | ||||||||||||||||| |||||||| ||||| |||||||||| Sbjct 138 GGCTAGTTAA-AGGCTTAGGTCTCGTTCGTTATCTGAATTAACAAGACAGATCACTCCAC 80 Query 200 CAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||| ||||||||||||| ||| ||| | ||||||||||| ||||| || ||||| Sbjct 79 GAACTGGAAACGGCCATGCACTACCCACCACACAATCAAGAAAGGGCTATTAACCTGTC 21 Score = 77.0 bits (84), Expect = 5e-12 Identities = 51/57 (89%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 27 CGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 83 ||||||| |||||| ||||||||| |||||||||||||||||| |||| || ||||| Sbjct 310 CGCGTGCAGCCCAGGACATCTAAGAGCATCACAGACCTGTTATGGCCTAAATCTTCC 254 >seq350 Length=3225 Score = 118 bits (130), Expect = 2e-24 Identities = 98/119 (82%), Gaps = 1/119 (1%) Strand=Plus/Plus Query 140 GGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCAC 199 ||||| ||| ||| | ||||||||||||||||| |||||||| ||||| |||||||||| Sbjct 634 GGCTAGTTAA-AGGCTTAGGTCTCGTTCGTTATCTGAATTAACAAGACAGATCACTCCAC 692 Query 200 CAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||| ||||| ||||||| ||| ||| | ||||||||||| ||||| || ||||| Sbjct 693 GAACTGGAAACGGNCATGCACTACCCACCACACAATCAAGAAAGGGCTATTAACCTGTC 751 Score = 87.8 bits (96), Expect = 3e-15 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 3 CTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGAC 62 |||| ||| |||| | ||||| ||||||| |||||| ||||||||| ||||||||||| Sbjct 438 CTCGCTGGTACCGTTATTGTAGTACGCGTGCAGCCCAGGACATCTAAGAGCATCACAGAC 497 Query 63 CTGTTATTGCCTCAAACTTCC 83 ||||||| |||| || ||||| Sbjct 498 CTGTTATGGCCTAAATCTTCC 518 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796793948304