Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20gruberi_20[genbank_20GCA_5F000004985.1_202010-01-20] 784 sequences; 40,964,085 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq539 131 3e-28 seq455 131 3e-28 seq350 131 3e-28 seq292 77.0 6e-12 >seq539 Length=1556 Score = 131 bits (144), Expect = 3e-28 Identities = 173/238 (73%), Gaps = 14/238 (6%) Strand=Plus/Minus Query 103 GGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGC 162 ||||| || |||| |||||||||||||||||| ||||||||| |||||| ||||||| | Sbjct 623 GGAAGATTTAGGCCATAACAGGTCTGTGATGCTCTTAGATGTCCTGGGCTGCACGCGTAC 564 Query 163 TACACTGACAGAGCCAACGAG---------TTCAT--CACCTTGGCCGGA-AGGTCTGGG 210 |||| | || | ||| |||| || || | |||| || | ||| |||| Sbjct 563 TACAATAACGGTACCAGCGAGCGCTATGGTTTTATAACCCCTTATCCTAATAGGATTGGG 504 Query 211 TAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGA 270 || ||| | |||| | || || ||||| ||| |||| || | ||| | ||||| Sbjct 503 AAAACTTTTCAAACACCGTTATGACAGGGATCGAGGATTGGAA--CATCCTCGTGAACGA 446 Query 271 GGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||||| ||||||||||| | |||||| | | ||||||||||||||||| |||||| Sbjct 445 GGAATTCCTAGTAAGCGTGGTTCATCATACCACATTGATTACGTCCCTGCCTTTTGTA 388 >seq455 Length=1130 Score = 131 bits (144), Expect = 3e-28 Identities = 173/238 (73%), Gaps = 14/238 (6%) Strand=Plus/Plus Query 103 GGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGC 162 ||||| || |||| |||||||||||||||||| ||||||||| |||||| ||||||| | Sbjct 541 GGAAGATTTAGGCCATAACAGGTCTGTGATGCTCTTAGATGTCCTGGGCTGCACGCGTAC 600 Query 163 TACACTGACAGAGCCAACGAG---------TTCAT--CACCTTGGCCGGA-AGGTCTGGG 210 |||| | || | ||| |||| || || | |||| || | ||| |||| Sbjct 601 TACAATAACGGTACCAGCGAGCGCTATGGTTTTATAACCCCTTATCCTAATAGGATTGGG 660 Query 211 TAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGA 270 || ||| | |||| | || || ||||| ||| |||| || | ||| | ||||| Sbjct 661 AAAACTTTTCAAACACCGTTATGACAGGGATCGAGGATTGGAA--CATCCTCGTGAACGA 718 Query 271 GGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||||| ||||||||||| | |||||| | | ||||||||||||||||| |||||| Sbjct 719 GGAATTCCTAGTAAGCGTGGTTCATCATACCACATTGATTACGTCCCTGCCTTTTGTA 776 >seq350 Length=3225 Score = 131 bits (144), Expect = 3e-28 Identities = 173/238 (73%), Gaps = 14/238 (6%) Strand=Plus/Minus Query 103 GGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGC 162 ||||| || |||| |||||||||||||||||| ||||||||| |||||| ||||||| | Sbjct 518 GGAAGATTTAGGCCATAACAGGTCTGTGATGCTCTTAGATGTCCTGGGCTGCACGCGTAC 459 Query 163 TACACTGACAGAGCCAACGAG---------TTCAT--CACCTTGGCCGGA-AGGTCTGGG 210 |||| | || | ||| |||| || || | |||| || | ||| |||| Sbjct 458 TACAATAACGGTACCAGCGAGCGCTATGGTTTTATAACCCCTTATCCTAATAGGATTGGG 399 Query 211 TAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGA 270 || ||| | |||| | || || ||||| ||| |||| || | ||| | ||||| Sbjct 398 AAAACTTTTCAAACACCGTTATGACAGGGATCGAGGATTGGAA--CATCCTCGTGAACGA 341 Query 271 GGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||||| ||||||||||| | |||||| | | ||||||||||||||||| |||||| Sbjct 340 GGAATTCCTAGTAAGCGTGGTTCATCATACCACATTGATTACGTCCCTGCCTTTTGTA 283 >seq292 Length=7486 Score = 77.0 bits (84), Expect = 6e-12 Identities = 51/57 (89%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 103 GGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCG 159 ||||| || |||| |||||||||||||||||| ||||||||| |||||| ||||||| Sbjct 254 GGAAGATTTAGGCCATAACAGGTCTGTGATGCTCTTAGATGTCCTGGGCTGCACGCG 310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947192573952