Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20gruberi_20[genbank_20GCA_5F000004985.1_202010-01-20] 784 sequences; 40,964,085 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq735 443 7e-122 seq740 201 4e-49 >seq735 Length=1073 Score = 443 bits (490), Expect = 7e-122 Identities = 390/479 (81%), Gaps = 11/479 (2%) Strand=Plus/Plus Query 46 CCTTAGGACACCTGCGTTATGGTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTG 105 |||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 443 CCTTTGTACACCTGCGTTATCTTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTG 502 Query 106 ACAATGTCATCAACCCGGATCG-GCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTG 164 | |||| || | | |||| | | |||| || || ||||||| || Sbjct 503 GCGATGTTCTCCATC--GATCATGAACTCGAATTCTTTTTAC--CAGAAAAGTGTATCAC 558 Query 165 AAGACCAGTTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGG-GTAGTGGTATTTCACT 223 | || |||| ||| || | | |||| || ||| |||||| ||||||||||| || | Sbjct 559 TACACTCGTTCT-CTT-ATGAAGTTAGTAGAATAACAATAAGGAGTAGTGGTATTACATT 616 Query 224 TGCGCCGAAACGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTA 283 ||||| | |||||||| ||| ||| ||||| || ||| |||| | | ||||| Sbjct 617 GACGCCGGA---GCTCCCACCTATACTATACCTCCTTCGTTATTCTACAACGCCAGACTA 673 Query 284 GAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCT 343 ||||||| ||||||||||||||||||||||||| | |||||||||||||||||||| Sbjct 674 GAGTCAAACTCAACAGGGTCTTCTTTCCCCGCTAACCAACCCAAGCCCGTTCCCTTGGCT 733 Query 344 GTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGT 403 || | ||||||||| ||||| ||||||||||||||||||| || ||||||||||||||| Sbjct 734 GTAGGTTCGCTAGACAGTAGGTAGGGACAGTGGGAATCTCATTGTTCCATTCATGCGCGT 793 Query 404 CACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTT 463 ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 794 CACAAATTAAATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTT 853 Query 464 TACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACA 522 ||||| ||||| | |||| ||||||||||||||||||||||||||||||||||||||| Sbjct 854 NACCCGTGCTTGATCGAATCTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACA 912 >seq740 Length=1068 Score = 201 bits (222), Expect = 4e-49 Identities = 241/320 (75%), Gaps = 11/320 (3%) Strand=Plus/Plus Query 46 CCTTAGGACACCTGCGTTATGGTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTG 105 |||| | ||||||||||||| |||||||||||||||| ||||||||||||||||||||| Sbjct 756 CCTTTGTACACCTGCGTTATCTTTTAACAGATGTGCCGNCCCAGCCAAACTCCCCACCTG 815 Query 106 ACAATGTCATCAACCCGGATCG-GCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTG 164 | |||| || | | |||| | | |||| || || ||||||| || Sbjct 816 GCGATGTTCTCCATC--GATCATGAACTCGAATTCTTTTTAC--CAGAAAAGTGTATCAC 871 Query 165 AAGACCAGTTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGG-GTAGTGGTATTTCACT 223 | || |||| ||| || | | |||| || ||| |||||| ||||||||||| || | Sbjct 872 TACACTCGTTCT-CTT-ATGAAGTTAGTAGAATAACAATAAGGAGTAGTGGTATTACATT 929 Query 224 TGCGCCGAAACGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTA 283 ||||| | |||||||| ||| ||| ||||| || ||| |||| | | ||||| Sbjct 930 GACGCCGGA---GCTCCCACCTATACTATACCTCCTTCGTTATTCTACAACGCCAGACTA 986 Query 284 GAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCT 343 ||||||| ||||||||||||||||||||||||| | |||||||||||||||||||| Sbjct 987 GAGTCAAACTCAACAGGGTCTTCTTTCCCCGCTAACCAANCCAAGCCCGTTCCCTTGGCT 1046 Query 344 GTGGTTTCGCTAGATAGTAG 363 || | ||||||||| ||||| Sbjct 1047 GTAGGTTCGCTAGACAGTAG 1066 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635187180032