Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20gruberi_20[genbank_20GCA_5F000004985.1_202010-01-20] 784 sequences; 40,964,085 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq62 170 2e-37 seq9 152 4e-32 seq38 141 7e-29 seq231 109 4e-19 >seq62 Length=286411 Score = 170 bits (188), Expect = 2e-37 Identities = 413/621 (67%), Gaps = 12/621 (2%) Strand=Plus/Minus Query 61027 GAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGAT 61086 ||| |||| ||| | || ||||| | ||||| || || ||||| |||| ||| | Sbjct 260556 GAAGCCCTCTTGAAGGAAAATCCACACCGTTTTGTCTTATTCCCTCTCGAATATCCAAAG 260497 Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 |||||| ||||| || ||||| || ||||||||||| | || || || ||| | Sbjct 260496 ATTTGGGAAATGTATAAGAAGGCCATGGCATCCTTCTGGACTGCTGAAGAAGTTGATCTT 260437 Query 61147 TCCAAAGACATGAATGACTGGGAGCGTTT---ATCGAGCGGTGAACAACATTTCATTAAA 61203 || || || | | ||| || | | | || ||||||| || || || Sbjct 260436 CACACTGATATTACACAATGGACCACCTTGACACCAAACG---AACAACACTTTATCAAG 260380 Query 61204 CATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGT 61263 ||| || || |||||||| || || |||||||| |||||||| ||||| | ||| Sbjct 260379 AGTGTTTTAGCTTTCTTTGCTGCGTCCGACGGTATTGTCAATGAAAATTTGTGCCAACAA 260320 Query 61264 TTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATG 61323 || | ||||| ||| | | || ||| | ||||||||||| ||||| ||||| || Sbjct 260319 TTTATGGCTGAGGTACAAATACCAGAAGCGAGATGTTTCTACGGTTTCCAAATTGCTATT 260260 Query 61324 GAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCG 61383 || ||| |||| | || ||||| ||| ||||| || || | || | ||| | Sbjct 260259 GAAAATATCCATGCTGAAATGTATAGTACACTCATTGAAACTTTGATAAAGGATCAAAGA 260200 Query 61384 GAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGAT 61443 ||| | | || |||||||||||||| || || | || | || | ||| || | Sbjct 260199 GAAAGACATCGTTTGTTCAATGCCATTGATACTGTTCCATCTGTACAAAAGAAGGCACGT 260140 Query 61444 TGGGCCTTCAATTGGATCACCAGT-ACAACGGCTACATTTGGTGAACGATTGCTGGCATT 61502 ||||| | || ||||||| | | | || | ||||| ||||| || |||| || Sbjct 260139 TGGGCTATGAAATGGATCAATAATGAGAA----TTTATTTGCCGAACGTTTATTGGCCTT 260084 Query 61503 TGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAA 61562 ||| || || ||| | || ||| ||| || || | || |||||||||||||| Sbjct 260083 TGCTTGTGTTGAAGGTATTTTCTTCTCTGGTTCTTTCTGTTCCATTTTTTGGTTGAAGAA 260024 Query 61563 ACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCAT 61622 |||||| || ||||| ||| || | ||| |||||| || || || || || || || | Sbjct 260023 ACGTGGTCTCATGCCTGGTTTGGCATTCTCCAATGAATTAATCTCCCGTGATGAAGGATT 259964 Query 61623 GCATTGTGATTTTG-CTGTTT 61642 || |||||||| |||||| Sbjct 259963 ACACACTGATTTTGCCTGTTT 259943 >seq9 Length=695587 Score = 152 bits (168), Expect = 4e-32 Identities = 573/886 (65%), Gaps = 27/886 (3%) Strand=Plus/Plus Query 61040 AAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGT 61099 |||| ||||||| |||||| || | || || | | ||| | || ||| |||| Sbjct 332309 AAGAAAATCCTCATCGTTTTGTTCTCTTTCCACTTCATTATCCTAAAATGTGGGAAATGT 332368 Query 61100 ACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGA 61159 |||||||| | ||||| |||||||| ||||||||||| ||| | || || || | Sbjct 332369 ACAAAAAGACAATGGCTTCATTCTGGACAGTGGAGGAGGTTGATCTTCACACTGATATAA 332428 Query 61160 ATGACTGGGAGCGTTTA---TCGAGCGGTGAACAACATTTCATTAA-ACATGTGTTGGCG 61215 ||| ||||| | || | ||||||||||||||| || ||| ||| |||| Sbjct 332429 CTGAATGGGAAAAACTCAATTCTAA---TGAACAACATTTCATCAAGACA-GTGCTGGCC 332484 Query 61216 TTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAG 61275 |||||||| || || || || |||||||| ||| ||| ||| ||| | | Sbjct 332485 TTCTTTGCAGCCAGTGATGGAATTGTCAATGAAAATCTATGTCAACAATTCATGGCACAA 332544 Query 61276 GTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCAC 61335 || ||||| | || || | |||||||| || || || |||||||| || ||| | || Sbjct 332545 GTTCAAGTACCAGAAGCAAGATGTTTCTATGGATTTCAAATTGCCATTGAAAATATTCAT 332604 Query 61336 TCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGA 61395 | || ||||| ||| |||||| || || || | || | ||| | | || Sbjct 332605 GCTGAAATGTATAGTACTCTCATTGAAACTCTGATTAAAGACCAAAGAGAAAGAAATCGT 332664 Query 61396 TTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAAT 61455 | || ||||||| || || |||| | || | |||||| | ||||| || || Sbjct 332665 CTATTTCATGCCATTGATACAGTACCATCAGTTCAAAAGAAAGCTAACTGGGCATTGAAA 332724 Query 61456 TGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAG 61515 ||||| | | | | | |||| |||| ||||| |||||||||| || ||| Sbjct 332725 TGGAT---TAATTCTGAGAATTTGTTTGCTGAAAGATTGTTGGCATTTGCATGTGTGGAG 332781 Query 61516 GGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATG 61575 || | || ||| |||| ||| |||| || ||||| ||||||||||| || ||| Sbjct 332782 GGAATTTTCTTCTCTGGAAGTTTTTGTTCAATTTTCTGGTTAAAGAAACGTGGTCTGATG 332841 Query 61576 CCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTT 61635 || ||| | | ||| ||||| |||||||| || || || || | ||| ||||| Sbjct 332842 CCTGGTTTATCATTCTCTAATGAATTGATATCTCGTGATGAAGGGTTACATACAGATTTC 332901 Query 61636 GC-TGTTT-TGCTATTC--AAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGG 61691 || ||||| |||||| | | || | ||| | | || | | || | Sbjct 332902 GCATGTTTACTCTATTCCACATTGAAATACACTAAAT--TACCTC-----AACAAGTAGT 332954 Query 61692 TGA---GATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCC 61748 | | ||||| ||| || || || || |||||||| | | ||| ||| || Sbjct 332955 TCATTCACTTGTTTATGAAGCTGTTGAGATTGAGAAGGAATTTATCAGTGAAAGTTTACC 333014 Query 61749 CGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGA 61808 || | || || |||||| || || ||||| || ||||||||| | ||||| || Sbjct 333015 AGTTGATTTGATTGGAATGAATAGTAGATTAATGCAACAATATATTGAAATGGTTGCTGA 333074 Query 61809 CCGTCTGTTGGTCGAT-TTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATT 61867 | ||||||| | |||| |||||| ||| ||||| | ||| ||||| |||| Sbjct 333075 TAGATTGTTGGTTTCTATTGGATATGAA-AAGATTTATAACTCATCAAATCCATTCGATT 333133 Query 61868 TCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAA 61913 ||| | || || || | ||| ||||| || ||||| ||||| Sbjct 333134 GGATGAATATCATATCTGTCAGTGGAAAGACAAACTTTTTTGAGAA 333179 >seq38 Length=381539 Score = 141 bits (156), Expect = 7e-29 Identities = 420/646 (65%), Gaps = 4/646 (1%) Strand=Plus/Minus Query 65993 ACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTA 66052 ||| |||| ||||| |||| | || ||||| || ||||| | || |||||||| ||| Sbjct 295928 ACATACTTTGGAAGAGCAATACTGGCAAGGTTACATACAGCAACTTCATCAGGAGCAGTA 295869 Query 66053 TACTCGACAATTTCGGTGCACAGATTACTGCAGCGT--ATGGTGCCCAAATTCTGTTGAT 66110 | || | |||||| || |||| ||| | || | ||||| || | || ||||||| Sbjct 295868 AATTCAATAATTTCAGTACACAAGTTA--GAAGACTTGATGGTACCAAGGTTTTGTTGAT 295811 Query 66111 TACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGG 66170 | || | ||| || | ||||||||||| |||||| || || || |||| ||||| Sbjct 295810 TGGATTTTCTATTACAAGAATCCTTGTACAACATGTATGGGACACCAGTTTCAATTTGGG 295751 Query 66171 ACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTACCTTTGC 66230 ||||| || || ||| || | | ||||| | || | ||| | |||| | Sbjct 295750 CTTCAATAATAGCAAACCAGAGTTCTTGAGCCTTGATGGTTCTCTTGGCCTTTCCTTCTC 295691 Query 66231 GTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGAC 66290 ||| || | || | || | ||| ||||||||| || || | |||| | || Sbjct 295690 TTTCATATTTGGTATATAATTGATTGAATTCTTCACCCCAAACATCAGCAAGACCTTGAG 295631 Query 66291 ACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGAT 66350 | | |||||| | || ||||| || |||| | | ||||| |||| || |||| Sbjct 295630 CTTCATTTGGACAGAAGAGTGACCATTCGGCATCATCCTTAACACGTTGCATGAAGAGAT 295571 Query 66351 CAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTT 66410 | | ||| | | |||| | ||| | |||| || || | |||||||| | Sbjct 295570 CGTTGACCCATAAACCCAAGAATAAATCTCTAGCTCTGATTTCTTCCTTACCGTGATTCT 295511 Query 66411 TGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACG 66470 | | ||| || | || ||||| ||||| | ||||| ||||||| || ||||| || | Sbjct 295510 TTCTCAAATCCAAAAAGTCAAAAATGTCAGAGTGCCAAGGTTCCAAATAAATGGCAAAGG 295451 Query 66471 AGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCA 66530 ||| | | || || |||||||| ||||| || | || | ||||| || | || Sbjct 295450 CACCCTTTCTCTTACCACCACCTTGATCGACATATCTGGCAGTGTCATTGAAAACTCTCA 295391 Query 66531 ACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCC 66590 |||| || | | || || ||| | || || || || ||| ||||| || | Sbjct 295390 ACATTGGAATTAAACCATTTGATGTTCCGTTTGTACCTCTAATGTATGATCCAGAAGCTC 295331 Query 66591 GTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGAT 66636 |||| |||||| || |||||||||||| || | ||| || || Sbjct 295330 TAATATTGTGAACTGACAAACCAATACCACCAGCAGACTTGGAAAT 295285 >seq231 Length=8293 Score = 109 bits (120), Expect = 4e-19 Identities = 224/329 (68%), Gaps = 8/329 (2%) Strand=Plus/Plus Query 61040 AAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGT 61099 |||| ||||||| |||||| || | || || | | ||| | || ||| |||| Sbjct 880 AAGAAAATCCTCATCGTTTTGTTCTCTTTCCACTTCATTATCCTAAAATGTGGGAAATGT 939 Query 61100 ACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGA 61159 |||||||| | ||||| |||||||| ||||||||||| ||| | || || || | Sbjct 940 ACAAAAAGACAATGGCTTCATTCTGGACAGTGGAGGAGGTTGATCTTCACACTGATATAA 999 Query 61160 ATGACTGGGAGCGTTTA---TCGAGCGGTGAACAACATTTCATTAA-ACATGTGTTGGCG 61215 ||| ||||| | || | ||||||||||||||| || ||| ||| |||| Sbjct 1000 CTGAATGGGAAAAACTCAACTCTAA---TGAACAACATTTCATCAAGACA-GTGCTGGCC 1055 Query 61216 TTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAG 61275 |||||||| || || || || |||||||| ||| ||| ||| ||| | | Sbjct 1056 TTCTTTGCGGCCAGTGATGGAATTGTCAATGAAAATCTATGTCAACAATTCATGGCACAA 1115 Query 61276 GTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCAC 61335 || ||||| | || || | |||||||| || || || |||||||| || ||| | || Sbjct 1116 GTTCAAGTACCAGAAGCAAGATGTTTCTATGGATTTCAAATTGCCATTGAAAATATTCAT 1175 Query 61336 TCGGAGATGTACAGTGTTCTCATCGATAC 61364 | || ||||| ||| |||||| || || Sbjct 1176 GCTGAAATGTATAGTACTCTCATTGAAAC 1204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397564201237760