Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20gruberi_20[genbank_20GCA_5F000004985.1_202010-01-20] 784 sequences; 40,964,085 total letters Query= NC_031927.1 Length=216121 Score E Sequences producing significant alignments: (Bits) Value seq66 150 2e-31 >seq66 Length=243952 Score = 150 bits (166), Expect = 2e-31 Identities = 370/553 (67%), Gaps = 6/553 (1%) Strand=Plus/Plus Query 162287 TATCTATTATTAAAACAGTTCA-ACCAGATGAAATATATAACCTAGGGGCTCAGAGTCAC 162345 ||||||| ||| || || | | ||| ||||||||||| ||||| || ||||| ||| Sbjct 55272 TATCTATCATTTCAA-AGATAAGACCTGATGAAATATACAACCTGGGAGCTCAATCTCAT 55330 Query 162346 GTTAAGGTTTCATTTGATCAGCCTGAATACACAGCACAGACCGACGCATTGGGCACTCTA 162405 ||||| | ||||| |||||||||||||||| | || | | || || || Sbjct 55331 GTTAAAATAAGCTTTGAAATGCCTGAATACACAGCAAATGTTGATGGTATTGGTACCTTA 55390 Query 162406 AGGGTGCTAGAAGCCGTCCGTCTTCTTGGTATGGAATCATACGTAAGAATCTACCAAGCG 162465 | | || ||||| |||| |||| ||||| | | |||| | || ||||| Sbjct 55391 CGATTTCTTGAAGCAATCCGAGCATGTGGTTTGGAAACGAAGACAAGATTTTATCAAGCA 55450 Query 162466 AGCACCAGTGAGCTTTATGGGCTAGTTCAGGAGACACCCCAGAAAGAAACCACTCCAATG 162525 ||||| ||| | ||||| | || || || | || || |||||||| |||||| | Sbjct 55451 AGCACATCAGAGTTGTATGGCTTGGTACAAGAAATTCCTCAAAAAGAAACTACTCCATTT 55510 Query 162526 TATCCACGATCCCCTTATGGAGTTGCTAAACTATATGGGTTCTGGATCATCAAAAACTAC 162585 ||||| ||||| ||||||| ||||| | || | | |||||| | | ||||| Sbjct 55511 TATCCTCGATCTCCTTATGCTTGCGCTAAGTTGTACAGTTACTGGATTGTTATTAACTAT 55570 Query 162586 AGGGAAAGCTATGACATACATGCCTCTAGCGGTATTCTATTCAATCACGAAAGCTCACGC 162645 || ||| ||| |||| |||| | |||||||| |||||||| ||||| || Sbjct 55571 AGAGAAGCTTATAACATGTTCGCCTTGAATGGTATTCTTTTCAATCATGAAAGTATCCGT 55630 Query 162646 AGAGGAGAGACGTTCGTCACACGCAAGATCGTCCGAGCCTTGTCCCGAATTAGTGTGGGA 162705 ||||| || || || ||| | || ||| || | | || ||| | | || Sbjct 55631 AGAGGTCCAACCTTTGTAACAAGAAAAATCACAATGGCAGTAGCTCGTATTCATCTAGGT 55690 Query 162706 CTCCAA-AGTGATCTACAACTTGGAAACCTCAATGCCCGACGTGACTGGGGACACGCCAA 162764 || ||| |||| | | | | || || | |||| | | || ||||| ||||| || Sbjct 55691 CTTCAAGAGTGCT-TGTATTTGGGTAATTTGGATGCTGAAAGAGATTGGGGCCACGCAAA 55749 Query 162765 AGACTACGTAGAGGCTATGTGGTTGATGCTTCAGCAAGAGAAGCCAGATGATTA-TGTGA 162823 || ||||| |||||||||||||||||||| || |||||||||||| || || |||| Sbjct 55750 GGATTACGTTGAGGCTATGTGGTTGATGCTCCAACAAGAGAAGCCATCAGACTATTGTG- 55808 Query 162824 TCGCAACTGGTGA 162836 | || ||||| || Sbjct 55809 TTGCCACTGGAGA 55821 Score = 136 bits (150), Expect = 5e-27 Identities = 349/529 (66%), Gaps = 2/529 (0%) Strand=Plus/Plus Query 162310 CCAGATGAAATATATAACCTAGGGGCTCAGAGTCACGTTAAGGTTTCATTTGATCAGCCT 162369 || |||||||| ||||| || || ||||| ||| ||||| || ||||| |||| Sbjct 115476 CCTGATGAAATTTATAATCTCGGTGCTCAATCTCATGTTAAAGTCAGCTTTGAGATGCCT 115535 Query 162370 GAATACACAGCACAGACCGACGCATTGGGCACTCTAAGGGTGCTAGAAGCCGTCCGTCTT 162429 |||||||| || | || || | || || | || || | ||||| | ||| | Sbjct 115536 GAATACACTGCTAATGTTGATGCTGTTGGTACATTGAGAATGTTGGAAGCTATTCGTGCT 115595 Query 162430 CTTGGTATGGAATCATACGTAAGAATCTACCAAGCGAGCACCAGTGAGCTTTATGGGCTA 162489 ||| | ||| | |||| | || ||||| || || ||| | ||||| | Sbjct 115596 TGTGGATTAGAAAAGAAGACAAGATTTTATCAAGCTAGTACTTCTGAATTGTATGGTTTG 115655 Query 162490 GTTCAGGAGACACCCCAGAAAGAAACCACTCCAATGTATCCACGATCCCCTTATGGAGTT 162549 ||||| || | ||||| |||||||||||||| | ||||| || || ||||||| | Sbjct 115656 GTTCAAGAAATCCCCCAAAAAGAAACCACTCCTTTCTATCCTCGTTCTCCTTATGCTTGT 115715 Query 162550 GCTAAACTATATGGGTTCTGGATCATCAAAAACTACAGGGAAAGCTATGACATACATGCC 162609 || || | ||| | | |||||| ||| || || || ||| || |||| ||| Sbjct 115716 GCAAAGTTGTATAGTTACTGGATTGTCATTAATTATAGAGAAGCTTACAACATGTTTGCT 115775 Query 162610 TCTAGCGGTATTCTATTCAATCACGAAAGCTCACGCAGAGGAGAGACGTTCGTCACACGC 162669 | | ||| ||||| |||||||||||||| | |||||| || || || || | Sbjct 115776 TTGAACGGAATTCTTTTCAATCACGAAAGTATTAGAAGAGGACCAACATTTGTAACCAGA 115835 Query 162670 AAGATCGTCCGAGCCTTGTCCCGAATTAGTGTGGGACTCCAAAGTGATCTACAACTTGGA 162729 |||||| || | | || ||| | | ||| | ||| | | | | | || Sbjct 115836 AAGATCACTATGGCTGTTGCTCGTATTCATCTTGGATTGCAAGATTGTTTGTATTTGGGT 115895 Query 162730 AACCTCAATGCCCGACGTGACTGGGGACACGCCAAAGACTACGTAGAGGCTATGTGGTTG 162789 || | |||| | | || ||||| || ||||| || || || | |||||||||||| Sbjct 115896 AATTTGGATGCTGAAAGAGATTGGGGGCATGCCAAGGATTATGTTAAAGCTATGTGGTTG 115955 Query 162790 ATGCTTCAGCAAGAGAAGCCAGATGATTA-TGTGATCGCAACTGGTGAG 162837 |||||||| ||||| ||||||| ||||| |||| | || ||||||||| Sbjct 115956 ATGCTTCAACAAGAAAAGCCAGCCGATTACTGTG-TTGCCACTGGTGAG 116003 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 691452423699840