Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F001049375.1_202015-06- 30] 165 sequences; 24,050,826 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq90 230 4e-58 >seq90 Length=920768 Score = 230 bits (254), Expect = 4e-58 Identities = 203/249 (82%), Gaps = 6/249 (2%) Strand=Plus/Plus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTT--TGC--TCGAATACATTAGCA 129 |||||| ||| |||| |||||||||||| |||||| || ||| | ||||| |||||| Sbjct 905889 TTTACTGTGAGAAAAGTAGAGTGTTCAAGGCAGGCATTATTGCAATTGAATATGTTAGCA 905948 Query 130 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGA 189 |||||||||| ||| | | | || | ||||||||||||||||||| | | ||||||| Sbjct 905949 TGGAATAATAAGATAAGGCTTTCGTCT-TATTTTGTTGGTTTCTAGGGCGGAAGTAATGA 906007 Query 190 TTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTA 249 || ||||||||||| ||||||| |||||||| | |||||||||||||| |||||| Sbjct 906008 TTGATAGGGATAGTTGGGGGTGCTAGTATTCAGCGGCCAGAGGTGAAATTCATGGATTCG 906067 Query 250 TTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAA 309 |||||||||||| ||||||||| |||||||||||||| || ||||||| ||||||| Sbjct 906068 CTGAAGACTAACTTATGCGAAAGCATTCACCAAGGATGTCCTCTTTAATCA-AGAACGAA 906126 Query 310 AGTTAGGGG 318 |||| |||| Sbjct 906127 AGTTGGGGG 906135 Score = 187 bits (206), Expect = 5e-45 Identities = 163/200 (82%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 119 ATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGAC 178 |||||||||||||| |||| | |||||| | || | ||||| |||||| | ||| Sbjct 920205 ATACATTAGCATGGGATAACATCATAGGATTT-CGATCCTATTGTGTTGGCCTTCGGGAT 920147 Query 179 CGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAAT 238 || ||||||||||| ||||| ||||||||| | ||||| || |||||||||||||| Sbjct 920146 CGGAGTAATGATTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAAT 920087 Query 239 TCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAAT 298 |||||||||||| ||||| ||| ||||||||||| || |||||||||||||||||||| Sbjct 920086 TCTTGGATTTATGAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAAT 920027 Query 299 CAGTGAACGAAAGTTAGGGG 318 || ||||||||||| |||| Sbjct 920026 CA-AGAACGAAAGTTGGGGG 920008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915198489920