Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F001049375.1_202015-06- 30] 165 sequences; 24,050,826 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq90 223 1e-55 seq76 78.8 4e-12 >seq90 Length=920768 Score = 223 bits (246), Expect = 1e-55 Identities = 220/281 (78%), Gaps = 5/281 (2%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-A 463 || ||||||||| ||||||||||||||||||| |||| | ||||||| ||||| | Sbjct 917938 CGACCCGTCTTGAAACACGGACCAAGGAGTCTGACATGTGTGCGAGTCAACGGGTGAGTA 917879 Query 464 AACCCGTGCG-CGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGAC 522 ||||||| | || || ||| ||| || | || ||| |||||||| |||| Sbjct 917878 AACCCGTAAGGCGCAAGGAAGCTGATTGGCTG---GATCCCTCACGGGTGCACAGCCGAC 917822 Query 523 CGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATG 582 ||| | |||| | | || || || |||| |||||| |||| ||||||||||||||| Sbjct 917821 CGACCTTGATCTTCTGAGAAGGGTTCGAGTGTGAGCATGCCTGTCGGGACCCGAAAGATG 917762 Query 583 GTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTT 642 ||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||| | Sbjct 917761 GTGAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCCCGCAGCGATA 917702 Query 643 CTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||| ||||||||||| ||||| | |||||||||||||||| Sbjct 917701 CTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGA 917661 Score = 170 bits (188), Expect = 8e-40 Identities = 226/309 (73%), Gaps = 16/309 (5%) Strand=Plus/Plus Query 382 GATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACAT 441 ||| ||| || |||||| || | ||||||||| ||||||||||||||||||| |||| Sbjct 909092 GATTCTGACGAAATGGTCGTCATTCACCCGTCTTGAAACACGGACCAAGGAGTCTTACAT 909151 Query 442 CTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGAAC 501 ||||||||| | ||| |||| || ||| |||||| |||| | | | || || Sbjct 909152 ATATGCGAGTAATCAAGTGGGAAACTTGTTTGCGCAATGAAGGTGA-CTGTGATGTGATG 909210 Query 502 C------CGTGAGGGT-GCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAA 554 | |||| ||| ||| ||||| || || | | || | || | Sbjct 909211 CTCGTCGCGTGCGGGCAGCAACATCGGGCGG--CTAAAA----CAACTGTAC--GACCAG 909262 Query 555 GAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAG 614 ||||||| |||| |||||||||||||||||||||||||| ||| ||| ||||||||| | Sbjct 909263 GAGCATATCTGTAGGGACCCGAAAGATGGTGAACTATGCTTGAGCAGGATGAAGCCAGGG 909322 Query 615 GAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTA 674 |||||||||||||| | || |||| | ||| ||||||||||| ||||| | ||| ||| Sbjct 909323 GAAACTCTGGTGGAAGTCCGAAGCGATACTGACGTGCAAATCGTTCGTCTGACTTGAGTA 909382 Query 675 TAGGGGCGA 683 ||||||||| Sbjct 909383 TAGGGGCGA 909391 Score = 163 bits (180), Expect = 1e-37 Identities = 131/158 (83%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| |||||| |||||| |||| |||| |||||||||| ||||||||||||| Sbjct 908564 GAGTCGGGTTGCTTGGGAGTGCAGCCCTAAGTGGGTGGTAAATTTCATCTAAAGCTAAAT 908623 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | | |||||||||||||| ||||||| |||| ||||||||||||| |||||| || Sbjct 908624 ACCTGTGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGAAA 908683 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAG 197 ||||||| ||| || || |||||||| ||| | |||| Sbjct 908684 AGAGAGTCAAACAGTACTTGAAATTGCTGAGAACGAAG 908721 Score = 163 bits (180), Expect = 1e-37 Identities = 135/165 (82%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGC 94 || |||||||| |||||||||||||||||| | || ||| |||||||| | || || || Sbjct 918324 TCTACGAGTCGGGTTGTTTGGGAATGCAGCCCCAATCGGGCGGTAAATTCCGTCCAAGGC 918265 Query 95 TAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTT 154 ||||||| ||| |||||||||||||| ||||||| | || |||||||||||| |||| Sbjct 918264 TAAATATGGGCGAGAGACCGATAGCGAACAAGTACCGCGAGGTAAAGATGAAAAGGACTT 918205 Query 155 TGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 || ||||||||| ||| || | ||||||||| | ||||||||| Sbjct 918204 TGAAAAGAGAGTCAAAGAGTGCTTGAAATTGTCGGGAGGGAAGCG 918160 >seq76 Length=455665 Score = 78.8 bits (86), Expect = 4e-12 Identities = 81/106 (76%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 382 GATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACAT 441 ||| ||| || |||||| || | ||||||||| ||||||||||||||||||| |||| Sbjct 447463 GATTCTGACGAAATGGTCGTCATTCACCCGTCTTGAAACACGGACCAAGGAGTCTTACAT 447522 Query 442 CTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGA 487 ||||||||| | ||| |||| || ||| |||||| |||| Sbjct 447523 ATATGCGAGTAATCAAGTGGGAAACTTGTTTGCGCAATGAAGGTGA 447568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079996460750