Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F001049375.1_202015-06- 30] 165 sequences; 24,050,826 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq90 307 2e-81 >seq90 Length=920768 Score = 307 bits (340), Expect = 2e-81 Identities = 224/259 (86%), Gaps = 2/259 (1%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 919504 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 919563 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||||||||||| | | || | | | ||||||||||||||||||| ||| Sbjct 919564 CCTGTTATTGCCTCAAACTTCCTTGGCCTAAACGGCCATAGTCCCTCTAAGAAGCCGGCC 919623 Query 122 ACCAACCATAG--TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179 || | || | | |||| |||||||| | ||||||||||||||| ||||||| Sbjct 919624 GTGAAGGGATGCCTCCACGTAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAATT 919683 Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 919684 AACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 919743 Query 240 AAAGAGCTATCAATCTGTC 258 |||||||| ||| |||||| Sbjct 919744 AAAGAGCTCTCAGTCTGTC 919762 Score = 268 bits (296), Expect = 1e-69 Identities = 214/252 (85%), Gaps = 12/252 (5%) Strand=Plus/Minus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 907025 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 906966 Query 77 AACTTCCATTGGCTGGAAG-CCAATAGTCCCTCTAAGAAGCCAGCCACCAA--CCAT--A 131 ||||||||| ||||| | || ||||||||||||||||| || ||| | || | Sbjct 906965 AACTTCCATCGGCTGCCACACCGATAGTCCCTCTAAGAAGTCACGGACCTAGGCCGGGAA 906906 Query 132 GTCGATGGGGCTATTTA-----GCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGA 186 | | || || || || ||||| | ||||||||||||||| |||||||||||||| Sbjct 906905 GGC-ATAGGCATAACTACAAAAGCAGGCTGAGGTCTCGTTCGTTAACGGAATTAACCAGA 906847 Query 187 CAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGC 246 ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| Sbjct 906846 CAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCGAAGTGATCAAGAAAGAGC 906787 Query 247 TATCAATCTGTC 258 | |||||||||| Sbjct 906786 T-TCAATCTGTC 906776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796798726365