Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F001049375.1_202015-06- 30] 165 sequences; 24,050,826 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq90 223 6e-56 >seq90 Length=920768 Score = 223 bits (246), Expect = 6e-56 Identities = 161/186 (87%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 33 ATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATT 92 ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| || Sbjct 912504 ATCAGTAGGATAAAACTAACCTGTCTCGCGACGGTCTAAACCCAGCTCACGTTCCCTGTT 912445 Query 93 AGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACA 152 || ||||||||||| || || | | ||| | ||||||||||||||||| Sbjct 912444 GGTAGGTGAACAATCTTACCGTTTGCCCCGTGTGCGAGGCAGGGATAGGAAGAGCCGACA 912385 Query 153 TCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCT 212 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 912384 TCGAAGAATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCT 912325 Query 213 GTGGTA 218 |||||| Sbjct 912324 GTGGTA 912319 Score = 82.4 bits (90), Expect = 1e-13 Identities = 75/94 (80%), Gaps = 8/94 (9%) Strand=Plus/Minus Query 209 CCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTC------GAGG--GACTAAAG 260 ||||||||||||||||||| ||||||||| | ||||||| || | ||||||| Sbjct 911843 CCCTGTGGTAACTTTTCTGACACCTCTAGTGTGAAATTTCCACATTGAAGCAAACTAAAG 911784 Query 261 GATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 ||||| ||||||| |||||| ||||||||||| Sbjct 911783 GATCGGTAGGCCATGCTTTCACAGTTTGTATTCA 911750 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854398590240