Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F001049375.1_202015-06- 30] 165 sequences; 24,050,826 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq90 125 7e-27 >seq90 Length=920768 Score = 125 bits (138), Expect = 7e-27 Identities = 138/179 (77%), Gaps = 6/179 (3%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTT--TGC--TCGAATACATTACCA 68 |||||| ||| |||| ||||| |||||| |||||| || ||| | ||||| ||| || Sbjct 905889 TTTACTGTGAGAAAAGTAGAGTGTTCAAGGCAGGCATTATTGCAATTGAATATGTTAGCA 905948 Query 69 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATG 128 |||||||||| ||| | | | || | |||||||| |||||||||| | | |||||| Sbjct 905949 TGGAATAATAAGATAAGGCTTTCGTCT-TATTTTGTTGGTTTCTAGGGCGGAA-GTAATG 906006 Query 129 ATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATT 187 || ||| ||||||| ||||||| |||||||| | || ||||||||||| |||||| Sbjct 906007 ATTGATAGGGATAGTTGGGGGTGCTAGTATTCAGCGGCCAGAGGTGAAATTCATGGATT 906065 Score = 84.2 bits (92), Expect = 2e-14 Identities = 100/133 (75%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 58 ATACATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGAC 117 |||||||| ||||| |||| | |||||| | || | ||||| ||| || | ||| Sbjct 920205 ATACATTAGCATGGGATAACATCATAGGATTT-CGATCCTATTGTGTTGGCCTTCGGGAT 920147 Query 118 CGCCCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAA 177 || |||||||| || | ||| ||||||||| | ||||| || |||| |||||||| Sbjct 920146 CGGA-GTAATGATTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAA 920088 Query 178 TTCTTGGATTTAT 190 ||||||||||||| Sbjct 920087 TTCTTGGATTTAT 920075 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511999181600