Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F001049375.1_202015-06- 30] 165 sequences; 24,050,826 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq90 320 3e-85 >seq90 Length=920768 Score = 320 bits (354), Expect = 3e-85 Identities = 263/316 (83%), Gaps = 13/316 (4%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCA------GGCCCGCTTTGGCGGGTCGCCGGCT 73 || |||||||| | |||||||| |||| | ||| | || ||| |||||| Sbjct 919671 GAACGAGACCTCAGCCTGCTAACTAGCTACGTGGAGGCATCCCTTCACGG----CCGGCT 919616 Query 74 TCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGAT 132 ||||||||||||||| | | | || | | |||||||||||||||||||||||||||||| Sbjct 919615 TCTTAGAGGGACTATGGCCGTTTAGGCCAAGGAAGTTTGAGGCAATAACAGGTCTGTGAT 919556 Query 133 GCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACC 192 |||||||||||||||||||||||||||||||||||||| | ||||||||||| |||| Sbjct 919555 GCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTTCA-CACC 919497 Query 193 TTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCA 252 ||||||| ||| | |||||||||| | ||| | ||||| |||||||||| ||||||| Sbjct 919496 TTGGCCGACAGGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGATCATTGCA 919438 Query 253 ATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTAC 312 ||| ||| ||||||||||||||| ||||||||||||| ||||||||| |||||||| ||| Sbjct 919437 ATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTAC 919378 Query 313 GTCCCTGCCCTTTGTA 328 |||||||||||||||| Sbjct 919377 GTCCCTGCCCTTTGTA 919362 Score = 212 bits (234), Expect = 1e-52 Identities = 207/262 (79%), Gaps = 6/262 (2%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGCTCA--AGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 906926 CTTCTTAGAGGGACTATCGGTGTGGCAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 906985 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTC-AT 188 |||||||||||||||||||||||||||||||||||||||| | |||||||| | | Sbjct 906986 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGCTGGGTTCAACGAGTCCGAA 907045 Query 189 C--ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGC 246 | |||||| | |||| |||| ||||||| | ||| | |||||| ||| | | Sbjct 907046 CCGTACTTGGCTGAAAGGCCTGGTTAATCTTTTGAAATCCCAGCGTGCTTGGGCTTGCCT 907105 Query 247 ATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTT 306 ||| || || | | ||||||||||| ||||||| ||| ||||||| | || | Sbjct 907106 CTTGGAACTAGAG-GCACCAACGAGGAATTCCTAGTAGACGCAAGTCATCAACTTGCATC 907164 Query 307 GATTACGTCCCTGCCCTTTGTA 328 |||||||||||||||||||||| Sbjct 907165 GATTACGTCCCTGCCCTTTGTA 907186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947198437120