Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F001049375.1_202015-06- 30] 165 sequences; 24,050,826 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq90 527 2e-147 >seq90 Length=920768 Score = 527 bits (584), Expect = 2e-147 Identities = 341/376 (91%), Gaps = 22/376 (6%) Strand=Plus/Plus Query 185 GATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACT 244 || ||||||||| |||| ||| ||||||||||||||||||||||| | ||||||||| Sbjct 916542 GAGTAAGTAAAATAACGTTAAAAGTAGTGGTATTTCACTTGCGCCGGA---GCTCCCACT 916598 Query 245 TATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCT 304 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 916599 TATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCT 916658 Query 305 TCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGA 364 ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| Sbjct 916659 TCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGA 916718 Query 365 TAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCA 424 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 916719 CAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCA 916778 Query 425 TTTGG-----------------CTA--CCTTAAGAGAGTCATAGTTACTCCCGCCGTTTA 465 ||||| ||| ||||||||||||||||||||||||||||||| Sbjct 916779 TTTGGTCCACACACATACACGTCTATGTGTTAAGAGAGTCATAGTTACTCCCGCCGTTTA 916838 Query 466 CCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTG 525 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 916839 CCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTG 916898 Query 526 CGTCAACATCACTTTC 541 |||||||||| |||| Sbjct 916899 CGTCAACATCGATTTC 916914 Score = 448 bits (496), Expect = 2e-123 Identities = 376/456 (82%), Gaps = 25/456 (5%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| || |||||| ||||||||||||||| |||| | ||||||||||||| ||||| Sbjct 911717 CTTCTGTTCTACAAGAGATTTCTGTTCTCTTTGAGCTCATCTTAGGACACCTGTGTTATC 911658 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAAC------- 119 ||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 911657 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATGGTCGAGCGTC 911598 Query 120 -CCGGATCGGCCCGCGAAG--GACC-------TTAACGCCAGAAAATGGTCGGTGAAGAC 169 || | ||||| ||||| | || |||| |||||| | || | | Sbjct 911597 ACCCGCTCGGCGACCGAAGCCGCCCGCCGGGTTTAATTCCAGAAGTCTGCCGCTCTCGCG 911538 Query 170 -CAGTTCCGCTTC--ATTGATTAAGTaaaaaaaCGATAAGG-GTAGTGGTATTTCACTTG 225 ||| |||||| | ||||||| ||| ||| || ||| |||||||||||||| | Sbjct 911537 GCAGATCCGCTATGAAACCATTAAGTCAAACAAC-ATCAGGAGTAGTGGTATTTCATCGG 911479 Query 226 CGCCGAAACGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGA 285 ||||| | |||||||||||| ||||||||| |||||||| |||||| ||| ||||||| Sbjct 911478 CGCCGGA---GCTCCCACTTATGCTACACCTCCCAAGTCATCTCACAATGTCAGACTAGA 911422 Query 286 GTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGT 345 ||||||||||||||||||||||| |||||||||| | |||||||||||||||||||||| Sbjct 911421 GTCAAGCTCAACAGGGTCTTCTTGCCCCGCTGATACACCCAAGCCCGTTCCCTTGGCTGT 911362 Query 346 GGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCA 405 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 911361 GGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCA 911302 Query 406 CTAATTAGATGACGAGGCATTTGGCTACCTTAAGAG 441 |||||||||||||||||||||||||||||||||||| Sbjct 911301 CTAATTAGATGACGAGGCATTTGGCTACCTTAAGAG 911266 Score = 185 bits (204), Expect = 3e-44 Identities = 105/107 (98%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 435 TTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTG 494 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 910771 TTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTG 910712 Query 495 ACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTC 541 ||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 910711 ACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCGATTTC 910665 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635197301920