Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F001049375.1_202015-06- 30] 165 sequences; 24,050,826 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq90 471 1e-130 >seq90 Length=920768 Score = 471 bits (522), Expect = 1e-130 Identities = 396/479 (83%), Gaps = 19/479 (4%) Strand=Plus/Plus Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 102 ||||| ||||||||||||||| | ||| |||||||||||||||||||||||||||||||| Sbjct 920214 TATTTTTTGTCACTACCTCCCTGAGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 920273 Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTA 162 || |||||||||||| |||||| ||||||||||||||||||||||| |||| |||||| Sbjct 920274 TTAGATGTGGTAGCCAATTCTCAAGCTCCCTCTCCGGAATCGAACCCCGATTCTCCGTTA 920333 Query 163 CCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTG 222 ||||||| ||||||| | |||||| | ||||||||||| ||||||||||||| ||| Sbjct 920334 CCCGTTGCGGCCATGGTTGTCCACTACACAACCATCGAAAGCTGATAGGGCAGAATGTTG 920393 Query 223 AATGAACCATCGCCGGCTC-AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGG 281 ||||| | ||||| || | ||||||||||||| ||| |||||| |||||||| || | Sbjct 920394 AATGATGCGTCGCCAGCACTAAGGCCATGCGATCCGTCGAGTTATCATGAATCATCA--G 920451 Query 282 AGC--CCCGAAG----GGCGTTGGTTTTTTATCTAATAAATACACCCCTTCCG---AAGT 332 ||| | | || |||| | ||||||||||||||| || |||||||| || Sbjct 920452 AGCAACGGGCAGAGCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCGCGAGGGT 920511 Query 333 CGGGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTA---AGGT 389 |||| || ||||||||||||||||||||||| |||| ||||||||||||| || Sbjct 920512 CGGGCGTTCCTGCATGTATTAGCTCTAGAATTACTACGGATATCCATGTAGTACTCGCGT 920571 Query 390 A---CTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTAT-AGA 445 | | |||||||||| ||||| ||||||||||||| |||||||||||||||| || Sbjct 920572 ACATCCATCAAATAAATTCAAACTGTTTTAATGAGCCATCCGCAGTTTCACTGTATAAGT 920631 Query 446 TTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 | |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| Sbjct 920632 TCGCTTATACTTAGACATGCATGGCTTAATCTTTGAAACAAGCATATCACTACTGGCAG 920690 Score = 462 bits (512), Expect = 7e-128 Identities = 421/519 (81%), Gaps = 20/519 (4%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAA-AAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 || |||||||||||||| || || || |||| || |||| ||||| ||||||||||| Sbjct 905263 GTTCTCATTCCAATTACCAGTCCTAACAAGAACCG-GTATTGTTATTTTTTGTCACTACC 905205 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||| | ||| |||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 905204 TCCCTGAGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTAGATGTGGTAGCCAA 905145 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 |||||| ||||||||||||||||||||||| |||| ||||||||||||| ||||||| Sbjct 905144 TTCTCAAGCTCCCTCTCCGGAATCGAACCCCGATTCTCCGTTACCCGTTGCGGCCATGGT 905085 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 | |||||| | ||||||||||| ||||||||||||| |||||||| | ||| | Sbjct 905084 TGTCCACTACACAACCATCGAAAGCTGATAGGGCAGAATGTTGAATGACCTGCCGCTG-- 905027 Query 240 TCAAGGCCATGCGATTCGTTAAGTTATTATGAATC-ACCAAGGAGCCCCGAAG--GGCGT 296 | |||| | || | || | ||||||| |||||| || || || || | | | | Sbjct 905026 CCGAGGCAA--CGGTCCGATCAGTTATTGTGAATCAACAAACGAAACCTGTTGCCAGGTT 904969 Query 297 TGGTTTTT-TATCTAATAAATACACCCCTTCCG---AAGTCGGGGTTTTTAGCATGTATT 352 |||||||| |||| |||||||||| |||||||| |||||| || ||||||||| Sbjct 904968 TGGTTTTTGTATCCAATAAATACAGCCCTTCCGCGAGGGTCGGGCGTTCCTGCATGTATT 904909 Query 353 AGCTCTAGAATTACCACGGTTATCCATGTAGTA---AGGTA---CTATCAAATAAACGAT 406 |||||||||||||| |||| ||||||||||||| ||| | |||||||||| Sbjct 904908 AGCTCTAGAATTACTACGGATATCCATGTAGTACTCGCGTACATCCATCAAATAAATTCA 904849 Query 407 AACTGATTTAATGAGCCATTCGCAGTTTCACTGTAT-AGATTGCTTATACTTAGACATGC 465 ||||| ||||||||||||| |||||||||||||||| || | |||||||||||||||||| Sbjct 904848 AACTGTTTTAATGAGCCATCCGCAGTTTCACTGTATAAGTTCGCTTATACTTAGACATGC 904789 Query 466 ATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||| |||||||||| ||||||||||| Sbjct 904788 ATGGCTTAATCTTTGAAACAAGCATATCACTACTGGCAG 904750 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510397507840