Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F001049375.1_202015-06- 30] 165 sequences; 24,050,826 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq68 147 2e-30 seq101 102 6e-17 >seq68 Length=472887 Score = 147 bits (162), Expect = 2e-30 Identities = 336/501 (67%), Gaps = 10/501 (2%) Strand=Plus/Minus Query 66419 TCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATA 66478 || |||||||| |||||||| || ||||| ||||||||||| | |||||||| |||| | Sbjct 102875 TCCAGGAACTCGAAGATGTCCGCGTGCCACGGTTCCAGGTACACGGCGAACGCGCCCTTG 102816 Query 66479 CGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAG-ACACGC--AACATC 66535 ||||| ||||| || |||||||||||||| | || ||| | || |||||| | ||| Sbjct 102815 CGTTTCCCGCCGCCCTGGTCGACGTAGCG---GGCAGTGTCGGAGAACACGCGAAGCATG 102759 Query 66536 GGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATA 66595 || |||| ||||| || |||| || || || ||| ||| || || || | Sbjct 102758 GGGACGATGCCGTTCGACGTGCCGTTCGTACCACGAATGTAGGAGCCGGTGGCGCGCACG 102699 Query 66596 TCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACT 66655 | ||| || | | ||||| || ||||||| ||| |||||| || || ||| || Sbjct 102698 TTGTGCACGTGGACGCCAATGCCGCCGGCCGACTTGGAGATGATGGCGCATTCGCGCAGC 102639 Query 66656 GTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGT 66715 || | | ||||| || |||||||| ||||| | || ||| |||| || | | Sbjct 102638 GTGTCGTAGATGCCCTCGATGGAGTCGTTCTTGAGCGCCACCAGGAAGCAGGACGACATT 102579 Query 66716 TGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGA 66775 || || ||| ||| |||| ||| | ||| || | |||||||| || | | Sbjct 102578 TGCGGGACGGGCGTGCCGGCGTTGAACATGGTCGGGGACGCGTGCGTGAACCACTTCTCG 102519 Query 66776 GACATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCC--ATGAATCCCGAGTG 66833 |||||| |||||||| | |||| | || | | | | || | || || |||| | Sbjct 102518 GACATGAGGTTGTACGTTTGGATGGCCGCCGCGA--TATCCGACTTGTGGATGCCGACGG 102461 Query 66834 CACATCGCATCAGGAGGTATTGAGGCCGTTCGACCAGCCGATCCTTGATATGCATTAAGT 66893 | |||||||| | || || || || ||| | | | | | || | || | || Sbjct 102460 CGACGCGCATCAGCATGTGCTGTGGGCGCTCGGCGATCTTGCCGTCGACCTTCAGCAGGT 102401 Query 66894 AGGAGCGTTCCAGGGTCTTGA 66914 | || |||||||||||||||| Sbjct 102400 ACGACCGTTCCAGGGTCTTGA 102380 Score = 143 bits (158), Expect = 2e-29 Identities = 830/1308 (63%), Gaps = 62/1308 (5%) Strand=Plus/Minus Query 65120 AGATAGTACATGCCGGTCTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAAT 65179 || ||||||||||| ||||||||||| | ||| || |||||||||||||| | | Sbjct 104205 AGGTAGTACATGCCCGTCTTGAGGCCTTTAGTCCAGGCGTAGAAATGCATCGACGTCAGC 104146 Query 65180 TTTGCATAATTCGGCTCGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGA 65239 || || | || |||| || || | || ||||| || ||| || ||| | Sbjct 104145 TTGCCAAAGTTAATGTCGGTCATGTGGACGTTGAACGATTGCGACTGGTCAATGAAGGCG 104086 Query 65240 CCACGATCTGCAGCCATGTCAATGATACGACGTCCCGAT-ATCTCCCAGACGGTCTTGTA 65298 || ||||| || ||||||||||| | |||| || | |||||||| ||||||||||| Sbjct 104085 CCGCGATCGGCGGCCATGTCAATCAG-CGACTTCTGCTTGATCTCCCAAACGGTCTTGTA 104027 Query 65299 CAGGCGACGTACCTCAATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAAT 65358 |||| | || || || ||||||| |||||| || || |||| || Sbjct 104026 CAGGTCCTTGAGATCCTGCGGGATTCGGTCAATGTTCTGGACCGACCCGTTGTGTGCCAT 103967 Query 65359 AATGCGATTACGCA--TCGACTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAG 65416 | | | |||| ||| || ||||| ||| | ||| || | | || | Sbjct 103966 CAGCTGGTGGCGCAAGTCG--TCGTCCCACAGGCCCCGGTTGATCAGGTCCACCAGCAGG 103909 Query 65417 TGACGATTGATGACTTGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTG 65476 || |||||||| |||||| || | ||| ||||| | | ||||||||| |||| Sbjct 103908 TGCTTGTTGATGACGGTGAACTCACCAGCCAGCACACGTCTCGCGTAGATGTTGCTCGTG 103849 Query 65477 ATGGGTTCAAAGGATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGA 65536 || || ||| | || |||| || || || ||| || || || || ||||| || Sbjct 103848 TACGGCTCGAAGCACTCGTTGTTCCCCAGGATCTGGCTGGTTGACGCTGTGGGCATCGGC 103789 Query 65537 GCGACCAACAATGAGTTTCGCAATCCGTTCATTTCAATGTTGTGACGCAATTCGTCCCAG 65596 |||| || ||| || || |||| || | | | || | | || |||||||| Sbjct 103788 GCGAGCAGCAACGAATTCCGCATGCCATGCCGGGCGATATCGGCCTTCAGCGCGTCCCAG 103729 Query 65597 TTCCACATCGGTTTATCGTCGACATCC--ACGGGCCACATATCCTGTTGCAGGGTTCC-- 65652 | ||| ||| || |||| | || |||||| || || || | || Sbjct 103728 TCCCA--TCG------CGACGACGGCTTTACATTCCACATGTCGAACTGGAGAATGCCCT 103677 Query 65653 GATACTGGCCGGTGAACCGAGGAAACTA-TCGTACACTCCCTCCTCCTTGGCAAG----T 65707 | || ||||| || ||| ||| | ||||| || |||| ||| || | Sbjct 103676 GGGAC--GCCGGGCTGCC-AGGGAACGACTCGTAGGGGCCGTCCTTAACGGCCAGATCCT 103620 Query 65708 TGACAGCTGGTCTCGAGTGCGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCA 65767 || || | | || || ||||| || || |||||||| ||| || || ||| | Sbjct 103619 TGGAGGCAGTGC---AG-GCCGCAAAGTAGATCGTCTCGAAGATGTCGCGGTTCAGTGCG 103564 Query 65768 CGTGCCTCATCGCTCTCGTACGGCATACC-CATCAGGACAAAAGTGTCGGCCAGACCTTG 65826 || ||||| ||| |||| |||| |||| ||| || | ||| || || || || Sbjct 103563 CGCGCCTCCGGCGAGTCGAACGGG-TACCGCATCTGGATGAAGGCGTCCGCAAGGCCCTG 103505 Query 65827 AACTCCAATACCGATGGGACGATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTA 65886 || || || |||| ||| | || |||| || || || | ||| || || |||||||| Sbjct 103504 GACGCCGATTCCGACGGGCCTGTGTCGCATGTTCGATCGGCGCGCTTCGGGCACAGGGTA 103445 Query 65887 GTAATTGATATCGATAATGCGATTCAAATTGCGTGTCACCACATGCACGATACGTCG--C 65944 || ||| ||||| | |||| || | || || || ||| |||||| | Sbjct 103444 ATAGTTGCCGTCGATCACCTTGTTCAGGTTCAGCGTTACAG--TGTACGTCACGTCGTAC 103387 Query 65945 AATTGTTCGAAATCAAAATGTTTAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGA 66004 | | | ||| || || || | || || |||| || ||||||| Sbjct 103386 AGCTTATGGAAGTCGAAC-GT----GGCG-TC---AGTGACG---------AACTTGGAC 103345 Query 66005 AGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATT 66064 || || | || || ||||||||||| || ||||||| | | || |||||||| ||| Sbjct 103344 AGTGCGATCGACGCCAGGTTGCAGACGGCCGTCTCGTCCGCCGACGTGTACTCGACGATT 103285 Query 66065 TCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTG 66124 || |||||||| ||||||| || || |||| |||| || || ||||| ||| Sbjct 103284 TCCGTGCACAGGTTACTGCTCTTGATCGTCCCCAGGTTCTTCTGGTTCGACTTGCTGTTG 103225 Query 66125 CATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCG 66184 || || ||||||||||||||||| || || || || || || |||| ||| | ||| ||| Sbjct 103224 CAAGCGTCCTTGTACATCATGTAGGGCGTCCCCGTTTCGACCTGGGCCTCCAGGATCGCG 103165 Query 66185 TGCCAAAGAGCGCGTGCCTTCACCG---TACG-TACCGCCCTACCTTTGCGTTCGTAATG 66240 ||| || | | ||| | | || |||| | ||| || | || || || | Sbjct 103164 AACCACAGGTCCTGCGCCCTGATCGTCTTACGTTGCCGGCCCTCGTT----CTCATAGCG 103109 Query 66241 TTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGG 66300 |||| | || |||| || ||||| || || | ||||| || || || || Sbjct 103108 TTCGAACAGCGCAGCGAACTCGTCGCCCCAGACGTCCGCCAGACCGGGCGCCTCGTTCGG 103049 Query 66301 ACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCA 66360 || | || |||||| | | || | ||||| |||| || ||||| || ||||| Sbjct 103048 GCAGAACAACGACCAGTGGGCGTCGGCCTGCACACGCTGCATGAACAGATCGGGAATCCA 102989 Query 66361 GAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATT 66408 ||| |||| || || || || || |||| ||| || ||||||| || Sbjct 102988 AAGGCCGTAAAACAGGTCACGAGCACGTTCCTCTTCCTTGCCGTGGTT 102941 >seq101 Length=873781 Score = 102 bits (112), Expect = 6e-17 Identities = 112/148 (76%), Gaps = 1/148 (1%) Strand=Plus/Minus Query 61496 TGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGT 61555 |||| || || | ||||| || | || ||||| |||||||| | | || || ||| Sbjct 439441 TGGCGTTCGCAGCAGTCGAAGGCATTTTCTTCAGCGGATCGTTCTGCTCGATTTTCTGGC 439382 Query 61556 TGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACG 61615 |||| || || || ||||||| ||| || | |||||||||||| | ||||| ||||||| Sbjct 439381 TGAAAAAGCGGGGGCTTATGCACGGGTTGTCGTTCAGCAATGAGCTTATATCTCGCGACG 439322 Query 61616 AGGGCATGCATTGTGATTTTG-CTGTTT 61642 | || ||||||| ||||||| |||||| Sbjct 439321 AAGGGCTGCATTGCGATTTTGCCTGTTT 439294 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/212 (70%), Gaps = 8/212 (4%) Strand=Plus/Minus Query 61255 TTGGAA--CGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCC 61312 |||||| || ||| || || |||||| | | || | ||| || ||||| || |||| Sbjct 439736 TTGGAAGTCGGTTCCTGCGTGAAGTGCAATGGCCAGAAGTGCGATGCTTCTATGGATTCC 439677 Query 61313 AGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372 | |||| |||||||| | |||||||||| |||| | | ||||| ||||| |||| Sbjct 439676 AACTTGCTATGGAGAACATTCACTCGGAGACGTACTCGTTGTTGATCGACACGTATATCA 439617 Query 61373 GGGAG--CGG-GCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGA 61429 | | || | | ||| |||| |||||||| || ||||||||||| ||| || Sbjct 439616 GAAATTCCGAAGAGAAAC---AACGGTTGTTCAACGCGATCGAGACGATTCCGTGTGTCC 439560 Query 61430 AGCGGAAAGCGGATTGGGCCTTCAATTGGATC 61461 || |||||| | ||||| | || |||||| Sbjct 439559 AGAAGAAAGCAAAATGGGCACTGAACTGGATC 439528 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397567200515600