Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F001049375.1_202015-06- 30] 165 sequences; 24,050,826 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq99 100 1e-15 seq37 86.0 3e-11 seq101 84.2 9e-11 >seq99 Length=174244 Score = 100 bits (110), Expect = 1e-15 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 349082 ATCTCCTTGAGTCTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCCGGCAAAGTGG 349141 ||||||||||| | || | || || |||||||||||||| | ||| || ||||||||| Sbjct 49541 ATCTCCTTGAGACGCGGGACACCGAGCGTCACGTTCTTGGCGGAGACACCAGCAAAGTGG 49482 Query 349142 AAGGTCTGGAGGGTCAACTGCGTGAGGGGCTCGCCGATGCACTGGCCCGCGAGGATGCCT 349201 || || | || |||| |||||| ||| || |||||| |||| |||| ||| || Sbjct 49481 AACGTGTTCAGCGTCATCTGCGTCGCGGGTTCACCGATGGACTGCGCCGCCAGGCAACCG 49422 Query 349202 ACCATCTCGCCGGGC 349216 ||||||||||| ||| Sbjct 49421 ACCATCTCGCCCGGC 49407 >seq37 Length=5730 Score = 86.0 bits (94), Expect = 3e-11 Identities = 172/247 (70%), Gaps = 10/247 (4%) Strand=Plus/Plus Query 222442 TACCTCCACTCG-CGCACCCCGTCCATCATCCACCGCGACCTCAAGTCCAGCAACCTGCT 222500 ||| | ||| || || |||| || ||| | ||| | ||||| ||| || ||||| || Sbjct 4859 TACTTGCACACGTCGAACCCTGTG-ATCCTGCACAGGGACCTGAAGACCGATAACCTCCT 4917 Query 222501 CGTGG---GCGACTCCCTGTCGATGAAGGTGGCCGACTTTGGGTTCGCGCGGATCAAGGA 222557 || | || ||| |||| | ||||| ||||||||||| | ||||| || ||| Sbjct 4918 GGTCGACCGCAACTGG--GTCG-TCAAGGTCGCCGACTTTGGCCTGACGCGGTTCCTGGA 4974 Query 222558 AACCAACGCCACC-ATGACACGGTGCGGCACGCCGTACTGGACGGCACCCGAGATCATCA 222616 || | || ||||| | | ||| ||||| ||||| | | |||||| || || Sbjct 4975 CGAGAA-GAAACAGATGACGCAGGTCGGGACGCCAATCTGGATGTCGCCCGAGGTCTGCA 5033 Query 222617 CCCAAGAGCGCTACACCGAGAAGGCCGACGTCTACTCGTTCGGCATCATCATGTGGGAGG 222676 || ||||| |||||||||||||| ||| ||||||||||||||||||||||| Sbjct 5034 TGGGCGACAAGTACACGGAGAAGGCCGACGTGTACGCGTTCGGCATCATCATGTGGGAGA 5093 Query 222677 TCATCAC 222683 |||| || Sbjct 5094 TCATGAC 5100 >seq101 Length=873781 Score = 84.2 bits (92), Expect = 9e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 349069 CGTGGCGTCGAGAATCTCCTTGAGTCTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGAC 349128 ||| |||| || ||||||||||| || |||| ||||| || |||||| | | |||||| Sbjct 534085 CGTTGCGTTGATAATCTCCTTGATTCGCGGCACACCCAGCGTTACGTTCATCGACGCGAC 534026 Query 349129 GCCGGCAAAGTGGAAGGTCTGGAGGGTCAACTGCGT 349164 ||||| |||||||| |||| || |||| |||||| Sbjct 534025 ACCGGCGAAGTGGAACGTCTTCAGAGTCATCTGCGT 533990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2084734685236670