Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F001049375.1_202015-06- 30] 165 sequences; 24,050,826 total letters Query= NC_031927.1 Length=216121 Score E Sequences producing significant alignments: (Bits) Value seq35 118 1e-21 >seq35 Length=630556 Score = 118 bits (130), Expect = 1e-21 Identities = 234/346 (68%), Gaps = 8/346 (2%) Strand=Plus/Plus Query 162496 GAGACACCCCAGAAAGAAACCACTCCAATGTATCCACGATCCCCTTATGGAGTTGCTAAA 162555 ||||| |||||| || || || || | || || || ||||| || | ||||| || Sbjct 186061 GAGACTCCCCAGTCTGAGACGACGCCGTTCTACCCGCGTTCCCCATACGCCGTTGCCAAG 186120 Query 162556 CTATATGGGTTCTGGATCATCAAAAACTACAGGGAAAGCTATGACATACATGCCTCTAGC 162615 | || | | |||||| | |||||| | ||| || | | |||| || || | Sbjct 186121 CAGTACGCCTACTGGATTGTTGTCAACTACCGTGAAGCGTACGGCCTACACGCGTCCAAT 186180 Query 162616 GGTATTCTATTCAATCACGAAAGCTCACGCAGAGGAGAGACGTTCGTCACACGCAAGATC 162675 || || || ||||| ||||||||| | || | || ||||||||| || ||||||||| Sbjct 186181 GGCATCCTGTTCAACCACGAAAGCCCGCGTCGTGGCCCGACGTTCGTGACCCGCAAGATC 186240 Query 162676 GTCCGAGCCTTGTCCCGAATTAGTGTGGGACTCCAAAGTGATCTAC----AACTTGGAAA 162731 || ||| | | || || | || |||| | || | | || || || Sbjct 186241 ACGCGTGCCGTCGCTCGCATCGCGGCCGG----CAAACAGGACTGCCTGTACCTCGGGAA 186296 Query 162732 CCTCAATGCCCGACGTGACTGGGGACACGCCAAAGACTACGTAGAGGCTATGTGGTTGAT 162791 | || | ||| ||||||||||| |||||||| |||||||| | || |||||| |||| Sbjct 186297 CATCGACGCCAAGCGTGACTGGGGGCACGCCAAGGACTACGTCGCTGCCATGTGGATGAT 186356 Query 162792 GCTTCAGCAAGAGAAGCCAGATGATTATGTGATCGCAACTGGTGAG 162837 | | ||||| |||||||| ||||| || || ||||| || || ||| Sbjct 186357 GATGCAGCAGGAGAAGCCGGATGACTACGTCATCGCGACCGGCGAG 186402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 691457773865400