Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F002093825.1_202017-04- 14] 667 sequences; 24,831,078 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq434 89.7 1e-15 >seq434 Length=93640 Score = 89.7 bits (98), Expect = 1e-15 Identities = 220/327 (67%), Gaps = 5/327 (2%) Strand=Plus/Plus Query 12 AATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTAA 71 || |||| ||||| || | ||||||||| |||||||||||||| | || ||| | |||| Sbjct 32432 AAGAAGCTCCGGCAAATTTCGTGCCAGCCGCCGCGGTAATACGAAAGGAGCAGGTGTTAT 32491 Query 72 TCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCCCC 131 || || | ||||||||||||| | | || ||||| || | | || | | | Sbjct 32492 TCAGATTAACTGGGCGTAAAGGGCATGTAGACGGTTCATTATGTGTACTATG-AGTTACA 32550 Query 132 GGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAGGGGGGTGG 191 | ||| | |||| | | | || ||| ||| |||| | | |||| | | Sbjct 32551 AAGTATAATTTTGGAA-AGTAGTATACACAGCAGAACTTGAGTTGGGTATAGGGTAGCAG 32609 Query 192 AATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAG-GAACACCAATGGCGAAGGCA 250 ||| |||| ||||||| | || || | || ||| ||||| |||||| ||| Sbjct 32610 AATCTTTAATGTAAAGGTGAAATTTGGTGAAAT-TAAAGAGAATACCAA-GGCGAAAGCA 32667 Query 251 GCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGAT 310 | ||| || | ||||||| | | | |||| || |||| |||||| ||||||||| Sbjct 32668 GTTACCTATGACGAAACTGACGTTGAGGTGCGAAGGCATGGGTAGCAAATAGGATTAGAG 32727 Query 311 ACCCTGGTAGTCCACGCCCTAAACGAT 337 ||||| |||||||| || |||||||| Sbjct 32728 ACCCTAGTAGTCCATGCAGTAAACGAT 32754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1289591398368