Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F002093825.1_202017-04- 14] 667 sequences; 24,831,078 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq434 147 7e-33 >seq434 Length=93640 Score = 147 bits (162), Expect = 7e-33 Identities = 247/351 (70%), Gaps = 16/351 (5%) Strand=Plus/Plus Query 156 ACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGC-AA 214 ||||||| ||||||| ||||||||| |||||| |||| |||| |||| |||||| || Sbjct 33639 ACAGGTGTTGCATGGCTGTCGTCAGTTCGTGTTGTGAAGTGTTTGGTTTAGTCCCTATAA 33698 Query 215 CGAGCGCAACCCTTAAG-CTTAGTTGCCATCATT---------AAGT--TGGGCACTCTA 262 ||| ||||| || || |||| |||| | || |||| | | ||| || Sbjct 33699 CGAACGCAATCCCTATCTCTTA-TTGCTAAAATACTTCTGCAAAAGTATTAAGAACT-TA 33756 Query 263 AGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCT 322 | | || | ||||| | ||| |||||| |||| ||| || ||||| |||| Sbjct 33757 GGAGAATCGCTAATAACAAATAAGCTGAAAGTGGGGGTGACGCCAAGTCGTCATGGCCCT 33816 Query 323 TATGATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGG 382 ||| ||||||||||||||| |||||| | ||||| | | ||| | | | || Sbjct 33817 TATAGACTGGGCTACACACGTGTTACAATAATTATTACAATGAGAAGCAATAATGTAAGT 33876 Query 383 TCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATG 442 | |||||| | | ||||| | | | ||||| |||| | |||| ||||||| ||||| Sbjct 33877 TGGAGCAAAACTC-TAAAGGTAATTTTAGTTCAGATTATTCTCTGTAACTCGAGAATATG 33935 Query 443 AAGCTGGAATCGCTAGTAATCGTAGATCAGCATGCTACGGTGAATACGTTC 493 ||| || |||||| |||||||| |||| || ||||| ||||||||| |||| Sbjct 33936 AAGTTGAAATCGCAAGTAATCGCAGATTAGTATGCTGCGGTGAATATGTTC 33986 Score = 89.7 bits (98), Expect = 2e-15 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 ||| | |||||| |||||||| ||||||||||||||||| | |||||||||||| ||| Sbjct 32823 TACAATCGCAAGATTGAAACTTAAAGGAATTGACGGGGATCTAAACAAGCGGTGGAACAT 32882 Query 61 GTGGTTTAATTCGA 74 |||||||||| ||| Sbjct 32883 GTGGTTTAATCCGA 32896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503989968320