Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F002093825.1_202017-04- 14] 667 sequences; 24,831,078 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq434 109 1e-21 >seq434 Length=93640 Score = 109 bits (120), Expect = 1e-21 Identities = 227/333 (68%), Gaps = 5/333 (2%) Strand=Plus/Plus Query 12 GAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCC 71 ||||| ||||| || | ||||||||| |||||||||||||| | || || | ||||| | Sbjct 32434 GAAGCTCCGGCAAATTTCGTGCCAGCCGCCGCGGTAATACGAAAGGAGCAGGTGTTATTC 32493 Query 72 GGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATG 131 || | ||||||||||||||| |||| |||| ||| || ||| | | | Sbjct 32494 AGATTAACTGGGCGTAAAGGGCATGTAGACGGTTCATTATGTGTACTATGAGTTACAAAG 32553 Query 132 GCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAA 191 | | | | | | | | || |||| || |||| | | || || ||| Sbjct 32554 TATAATTTTGGAAAGTAGTAT--ACACAGCAGAACTTGAGTTGGGTATAGGGTAGCAGAA 32611 Query 192 TTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCT 251 | || |||| |||||||| | || |||| ||| |||| |||||| || | | Sbjct 32612 TCTTTAATGTAAAGGTGAAATTTGGTGAAATTAAAGAGAATACCAA-GGCGAAAGCAGTT 32670 Query 252 TGCTG-GACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATAC 310 || ||| | ||||||| ||||| |||| || |||| |||||| ||||||||| || Sbjct 32671 ACCTATGAC-GAAACTGACGTTGAGGTGCGAAGGCATGGGTAGCAAATAGGATTAGAGAC 32729 Query 311 CCTGGTAGTCCACGCCGTAAACGATGAATACTA 343 ||| |||||||| || |||||||||||||| || Sbjct 32730 CCTAGTAGTCCATGCAGTAAACGATGAATATTA 32762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203191974656